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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot O60931: Variant p.Gly309Asp

Cystinosin
Gene: CTNS
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Variant information Variant position: help 309 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Glycine (G) to Aspartate (D) at position 309 (G309D, p.Gly309Asp). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from glycine (G) to medium size and acidic (D) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In CTNS. Any additional useful information about the variant.


Sequence information Variant position: help 309 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 367 The length of the canonical sequence.
Location on the sequence: help FYYKSTEGWSIGNVLLDFTG G SFSLLQMFLQSYNNDQWTLI The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         FYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLI

Mouse                         FYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLI

Bovine                        FHYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLI

Caenorhabditis elegans        YTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAF

Drosophila                    YRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSI

Slime mold                    FKNKSTSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWNIF
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 23 – 367 Cystinosin
Topological domain 309 – 331 Lumenal
Domain 263 – 328 PQ-loop 2
Binding site 301 – 301
Binding site 305 – 305 protonated residue following cystine-binding
Binding site 305 – 305
Mutagenesis 301 – 301 N -> A. Strongly decreased cystine transport.
Mutagenesis 305 – 305 D -> E. Abolished steady-state transport current.
Mutagenesis 305 – 305 D -> N. Abolished cystine transport. Abolished transient cxurrents. Abolished steady-state transport current.
Mutagenesis 309 – 309 G -> CS. Gain-of-function mutant that shows higher transport of cystine.
Mutagenesis 312 – 312 S -> N. Gain-of-function mutant that shows higher transport of cystine.
Mutagenesis 319 – 319 Q -> A. Strongly decreased cystine transport.
Helix 299 – 322



Literature citations
Two novel CTNS mutations in cystinosis patients in Thailand.
Yeetong P.; Tongkobpetch S.; Kingwatanakul P.; Deekajorndech T.; Bernardini I.M.; Suphapeetiporn K.; Gahl W.A.; Shotelersuk V.;
Gene 499:323-325(2012)
Cited for: VARIANTS CTNS ASP-309 AND LYS-323;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.