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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9HC07: Variant p.Arg126Cys

Putative divalent cation/proton antiporter TMEM165
Gene: TMEM165
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Variant information Variant position: help 126 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Arginine (R) to Cysteine (C) at position 126 (R126C, p.Arg126Cys). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from large size and basic (R) to medium size and polar (C) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In CDG2K; alters subcellular location; displays decreased affinity for Ca(2+) ions; does not affect the affinity for Mn(2+) ions. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 126 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 324 The length of the canonical sequence.
Location on the sequence: help VSELGDKTFFIAAIMAMRYN R LTVLAGAMLALGLMTCLSVL The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         VSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVL

Mouse                         VSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVL

Rat                           VSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVL
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 34 – 324 Putative divalent cation/proton antiporter TMEM165
Topological domain 111 – 126 Cytoplasmic
Mutagenesis 124 – 124 Y -> S. Alters subcellular location.
Mutagenesis 127 – 127 L -> G. No effect on subcellular location.



Literature citations
Impact of disease-causing mutations on TMEM165 subcellular localization, a recently identified protein involved in CDG-II.
Rosnoblet C.; Legrand D.; Demaegd D.; Hacine-Gherbi H.; de Bettignies G.; Bammens R.; Borrego C.; Duvet S.; Morsomme P.; Matthijs G.; Foulquier F.;
Hum. Mol. Genet. 22:2914-2928(2013)
Cited for: SUBCELLULAR LOCATION; MUTAGENESIS OF TYR-124; LEU-127 AND 209-LEU-LEU-210; CHARACTERIZATION OF VARIANTS CDG2K HIS-126; CYS-126 AND ARG-304; TOPOLOGY; The human Golgi protein TMEM165 transports calcium and manganese in yeast and bacterial cells.
Stribny J.; Thines L.; Deschamps A.; Goffin P.; Morsomme P.;
J. Biol. Chem. 295:3865-3874(2020)
Cited for: FUNCTION; TRANSPORTER ACTIVITY; BIOPHYSICOCHEMICAL PROPERTIES; CHARATERIZATION OF VARIANTS CDG2K GLY-108; CYS-126; HIS-126 AND ARG-304; TMEM165 deficiency causes a congenital disorder of glycosylation.
Foulquier F.; Amyere M.; Jaeken J.; Zeevaert R.; Schollen E.; Race V.; Bammens R.; Morelle W.; Rosnoblet C.; Legrand D.; Demaegd D.; Buist N.; Cheillan D.; Guffon N.; Morsomme P.; Annaert W.; Freeze H.H.; Van Schaftingen E.; Vikkula M.; Matthijs G.;
Am. J. Hum. Genet. 91:15-26(2012)
Cited for: VARIANTS CDG2K HIS-126; CYS-126 AND ARG-304; FUNCTION; SUBCELLULAR LOCATION; TISSUE SPECIFICITY;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.