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UniProtKB/Swiss-Prot Q92734: Variant p.Pro285Leu

Protein TFG
Gene: TFG
Variant information

Variant position:  285
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Proline (P) to Leucine (L) at position 285 (P285L, p.Pro285Leu).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Similar physico-chemical property. Both residues are medium size and hydrophobic.
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -3
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In HMSNO; does not affect interaction with PDCD6.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  285
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  400
The length of the canonical sequence.

Location on the sequence:   PQQYGIQYSASYSQQTGPQQ  P QQFQGYGQQPTSQAPAPAFS
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         PQQYGIQYSASYSQQTGPQQPQQFQGYGQQPTSQAPAPAFS

Caenorhabditis elegans        PPPSGP--PSEYGGYAPPQQQQQ--QFGAPPPQGAPQQGFG

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 400 Protein TFG
Region 187 – 400 Disordered
Compositional bias 227 – 347 Polar residues
Alternative sequence 285 – 400 Missing. In isoform 3 and isoform 4.


Literature citations

The TRK-fused gene is mutated in hereditary motor and sensory neuropathy with proximal dominant involvement.
Ishiura H.; Sako W.; Yoshida M.; Kawarai T.; Tanabe O.; Goto J.; Takahashi Y.; Date H.; Mitsui J.; Ahsan B.; Ichikawa Y.; Iwata A.; Yoshino H.; Izumi Y.; Fujita K.; Maeda K.; Goto S.; Koizumi H.; Morigaki R.; Ikemura M.; Yamauchi N.; Murayama S.; Nicholson G.A.; Ito H.; Sobue G.; Nakagawa M.; Kaji R.; Tsuji S.;
Am. J. Hum. Genet. 91:320-329(2012)
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 3 AND 4); VARIANT HMSNO LEU-285; ALTERNATIVE SPLICING;

The calcium-binding protein ALG-2 promotes endoplasmic reticulum exit site localization and polymerization of Trk-fused gene (TFG) protein.
Kanadome T.; Shibata H.; Kuwata K.; Takahara T.; Maki M.;
FEBS J. 284:56-76(2017)
Cited for: FUNCTION; SUBCELLULAR LOCATION; INTERACTION WITH PDCD6; CHARACTERIZATION OF VARIANT SPG57 CYS-106; CHARACTERIZATION OF VARIANT HMSNO LEU-285;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.