UniProtKB/SwissProt variant VAR

Variant information

Variant position:

419

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LP/P [Disclaimer]

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Proline (P) to Serine (S) at position 419 (P419S, p.Pro419Ser).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and hydrophobic (P) to small size and polar (S)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-1

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In MFM1; found in a family with myofibrillar myopathy and arrhythmogenic right ventricular cardiomyopathy.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs62635763 [ dbSNP | Ensembl ]

Sequence information

Variant position:

419

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

470

The length of the canonical sequence.

Location on the sequence:

DVEIATYRKLLEGEESRINL P IQTYSALNFRETSPEQRGSE

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         DVEIATYRKLLEGEESRINLPI-QTY-SALNFRETSPEQRGSE

Mouse                         DVEIATYRKLLEGEESRINLPI-QTF-SALNFRETSPEQRG

Rat                           DVEIATYRKLLEGEESRINLPI-QTF-SALNFRETSPEQRG

Pig                           DVEIATYRKLLEGEESRINLPI-QTF-SALNFRETSPEQRG

Bovine                        DVEIATYRKLLEGEESRINLPI-QTF-SALNFRETSPEQRG

Chicken                       DVEIATYRKLLEGEENRISIPMHQTFASALNFRETSPDQRG

Xenopus laevis                DMEIATYRKLLEGEESRITLPI-QTF-SALSFRETSPEQRA

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	2 – 470	Desmin
Region	413 – 470	Tail
Modified residue	424 – 424	Phosphoserine

Literature citations

Autosomal dominant myofibrillar myopathy with arrhythmogenic right ventricular cardiomyopathy 7 is caused by a DES mutation.
Hedberg C.; Melberg A.; Kuhl A.; Jenne D.; Oldfors A.;
Eur. J. Hum. Genet. 20:984-985(2012)
Cited for: VARIANT MFM1 SER-419;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P17661: Variant p.Pro419Ser