UniProtKB/Swiss-Prot P51610: Variant p.Ser225Asn

Host cell factor 1
Gene: HCFC1
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Variant information Variant position:

225 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

US The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Serine (S) to Asparagine (N) at position 225 (S225N, p.Ser225Asn). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from small size and polar (S) to medium size and polar (N) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description:

In MAHCX; uncertain significance. Any additional useful information about the variant.
Other resources:

Links to websites of interest for the variant.

Variant rs318240758 [ dbSNP | Ensembl ]

Sequence information Variant position:

225 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

2035 The length of the canonical sequence.
Location on the sequence:

AVVYTEKDNKKSKLVIYGGM S GCRLGDLWTLDIDTLTWNKP The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         AVVYTEKDNKKSKLVIYGGMSGCRLGDLWTLDIDTLTWNKP

Mouse                         AVVYTEKDNKKSKLVIYGGMSGCRLGDLWTLDIETLTWNKP

Rat                           AVVYTEKDNKKSKLVIYGGMSGCRLGDLWTLDIETLTWNKP

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	2 – 1423	HCF N-terminal chain 6
Chain	2 – 1323	HCF N-terminal chain 5
Chain	2 – 1295	HCF N-terminal chain 4
Chain	2 – 1110	HCF N-terminal chain 3
Chain	2 – 1081	HCF N-terminal chain 2
Chain	2 – 1019	HCF N-terminal chain 1
Repeat	217 – 265	Kelch 4
Cross	244 – 244	Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)
Mutagenesis	228 – 228	R -> D. Eliminates VIC formation and association with VP16. Unable to rescue proliferation in temperature-sensitive arrested cells.

Literature citations
A noncoding, regulatory mutation implicates HCFC1 in nonsyndromic intellectual disability.
Huang L.; Jolly L.A.; Willis-Owen S.; Gardner A.; Kumar R.; Douglas E.; Shoubridge C.; Wieczorek D.; Tzschach A.; Cohen M.; Hackett A.; Field M.; Froyen G.; Hu H.; Haas S.A.; Ropers H.H.; Kalscheuer V.M.; Corbett M.A.; Gecz J.;
Am. J. Hum. Genet. 91:694-702(2012)
Cited for: VARIANT MAHCX ASN-225;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.