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UniProtKB/Swiss-Prot Q96PY6: Variant p.Gly145Arg

Serine/threonine-protein kinase Nek1
Gene: NEK1
Variant information

Variant position:  145
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Glycine (G) to Arginine (R) at position 145 (G145R, p.Gly145Arg).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from glycine (G) to large size and basic (R)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In SRTD6.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.

Sequence information

Variant position:  145
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  1258
The length of the canonical sequence.

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

Chain 1 – 1258 Serine/threonine-protein kinase Nek1
Domain 4 – 258 Protein kinase
Active site 128 – 128 Proton acceptor
Modified residue 156 – 156 Phosphothreonine
Modified residue 162 – 162 Phosphothreonine; by autocatalysis

Literature citations

NEK1 and DYNC2H1 are both involved in short rib polydactyly Majewski type but not in Beemer Langer cases.
El Hokayem J.; Huber C.; Couve A.; Aziza J.; Baujat G.; Bouvier R.; Cavalcanti D.P.; Collins F.A.; Cordier M.P.; Delezoide A.L.; Gonzales M.; Johnson D.; Le Merrer M.; Levy-Mozziconacci A.; Loget P.; Martin-Coignard D.; Martinovic J.; Mortier G.R.; Perez M.J.; Roume J.; Scarano G.; Munnich A.; Cormier-Daire V.;
J. Med. Genet. 49:227-233(2012)
Cited for: VARIANTS SRTD6 ARG-145 AND SER-253;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.