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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P48730: Variant p.His46Arg

Casein kinase I isoform delta
Gene: CSNK1D
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Variant information Variant position: help 46 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Histidine (H) to Arginine (R) at position 46 (H46R, p.His46Arg). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (H) to large size and basic (R) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In FASPS2; strongly reduces kinase activity. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 46 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 415 The length of the canonical sequence.
Location on the sequence: help GTDIAAGEEVAIKLECVKTK H PQLHIESKIYKMMQGGVGIP The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         GTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIP

Mouse                         GTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIP

Rat                           GTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIP

Bovine                        GTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIP

Xenopus laevis                GTDIAASEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIP

Xenopus tropicalis            GTDIAAAEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIP
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 415 Casein kinase I isoform delta
Domain 9 – 277 Protein kinase
Binding site 38 – 38
Mutagenesis 38 – 38 K -> M. Impaired kinase activity and abnormal subcellular localization with exclusive accumulation to the nucleus.
Beta strand 44 – 46



Literature citations
Casein kinase idelta mutations in familial migraine and advanced phase.
Brennan K.C.; Bates E.A.; Shapiro R.E.; Zyuzin J.; Hallows W.C.; Huang Y.; Lee H.Y.; Jones C.R.; Fu Y.H.; Charles A.C.; Ptacek L.J.;
Sci. Transl. Med. 5:183ra56-183ra56(2013)
Cited for: VARIANTS FASPS2 ALA-44 AND ARG-46; CHARACTERIZATION OF VARIANTS FASPS2 ALA-44 AND ARG-46; FUNCTION; CATALYTIC ACTIVITY; BIOPHYSICOCHEMICAL PROPERTIES;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.