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UniProtKB/Swiss-Prot Q96H96: Variant p.Met78Val

4-hydroxybenzoate polyprenyltransferase, mitochondrial
Gene: COQ2
Variant information

Variant position:  78
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Methionine (M) to Valine (V) at position 78 (M78V, p.Met78Val).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Similar physico-chemical property. Both residues are medium size and hydrophobic.
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  1
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In MSA1; associated with disease susceptibility; decreased ubiquinone biosynthesis.
Any additional useful information about the variant.



Sequence information

Variant position:  78
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  371
The length of the canonical sequence.

Location on the sequence:   LSAAAVVDSAPRPLQPYLRL  M RLDKPIGTWLLYLPCTWSIG
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         LSAAAVVDSA--------------P-----RPL--------QPYLRLMRLDKPIGTWLLYLPCTWSIG

Mouse                         LSAAAVVNSA--------------P-----RPL--------

Rat                           LSAAAVVNSA--------------P-----RPL--------

Bovine                        LSAAAVVNSA--------------P-----RPL--------

Caenorhabditis elegans        PTASSLVASS--------------P-----PNL--------

Drosophila                    TATEPVKQQT--------------PLQELVSAA--------

Slime mold                    TTVSTLLDDNNSNSNNNNNSNNNKPSTTFVNDWISKFPNSV

Baker's yeast                 FTSKELEVARKERLDGLGPFVSRLP-----KKW--------

Fission yeast                 FS----------------------------KRW--------

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 35 – 371 4-hydroxybenzoate polyprenyltransferase, mitochondrial
Topological domain 35 – 83 Mitochondrial matrix


Literature citations

The COQ2 genotype predicts the severity of coenzyme Q10 deficiency.
Desbats M.A.; Morbidoni V.; Silic-Benussi M.; Doimo M.; Ciminale V.; Cassina M.; Sacconi S.; Hirano M.; Basso G.; Pierrel F.; Navas P.; Salviati L.; Trevisson E.;
Hum. Mol. Genet. 25:4256-4265(2016)
Cited for: FUNCTION; SUBCELLULAR LOCATION; TOPOLOGY; CHARACTERIZATION OF VARIANTS COQ10D1 VAL-78; ASN-96; ARG-132; HIS-147; SER-178; CYS-247 AND VAL-252;

Mutations in COQ2 in familial and sporadic multiple-system atrophy.
Multiple-System Atrophy Research Collaboration;
N. Engl. J. Med. 369:233-244(2013)
Cited for: VARIANTS MSA1 LEU-29; HIS-49; THR-57; VAL-78; THR-97; SER-107; PHE-113; ALA-267; CYS-297; GLN-337 AND ALA-343; VARIANTS VAL-16; LEU-22; HIS-69 AND HIS-336;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.