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UniProtKB/Swiss-Prot Q02548: Variant p.Asp53Val

Paired box protein Pax-5
Gene: PAX5
Variant information

Variant position:  53
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LB/B
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Aspartate (D) to Valine (V) at position 53 (D53V, p.Asp53Val).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from medium size and acidic (D) to medium size and hydrophobic (V)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -3
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page



Sequence information

Variant position:  53
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  391
The length of the canonical sequence.

Location on the sequence:   LPDVVRQRIVELAHQGVRPC  D ISRQLRVSHGCVSKILGRYY
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY

Mouse                         LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY

Xenopus laevis                LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 391 Paired box protein Pax-5
DNA binding 16 – 142 Paired
Region 19 – 75 PAI subdomain
Helix 51 – 58


Literature citations

A recurrent germline PAX5 mutation confers susceptibility to pre-B cell acute lymphoblastic leukemia.
Shah S.; Schrader K.A.; Waanders E.; Timms A.E.; Vijai J.; Miething C.; Wechsler J.; Yang J.; Hayes J.; Klein R.J.; Zhang J.; Wei L.; Wu G.; Rusch M.; Nagahawatte P.; Ma J.; Chen S.C.; Song G.; Cheng J.; Meyers P.; Bhojwani D.; Jhanwar S.; Maslak P.; Fleisher M.; Littman J.; Offit L.; Rau-Murthy R.; Fleischut M.H.; Corines M.; Murali R.; Gao X.; Manschreck C.; Kitzing T.; Murty V.V.; Raimondi S.C.; Kuiper R.P.; Simons A.; Schiffman J.D.; Onel K.; Plon S.E.; Wheeler D.A.; Ritter D.; Ziegler D.S.; Tucker K.; Sutton R.; Chenevix-Trench G.; Li J.; Huntsman D.G.; Hansford S.; Senz J.; Walsh T.; Lee M.; Hahn C.N.; Roberts K.G.; King M.C.; Lo S.M.; Levine R.L.; Viale A.; Socci N.D.; Nathanson K.L.; Scott H.S.; Daly M.; Lipkin S.M.; Lowe S.W.; Downing J.R.; Altshuler D.; Sandlund J.T.; Horwitz M.S.; Mullighan C.G.; Offit K.;
Nat. Genet. 45:1226-1231(2013)
Cited for: VARIANT ALL3 SER-183; VARIANTS ARG-24; GLY-26; GLN-34; VAL-53; GLY-59; ASN-66; ARG-75; ARG-80; THR-139; ILE-151; VAL-183; LEU-213; THR-301 AND VAL-338; CHARACTERIZATION OF VARIANT ALL3 SER-183;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.