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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P10826: Variant p.Arg394Cys

Retinoic acid receptor beta
Gene: RARB
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Variant information Variant position: help 394 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Arginine (R) to Cysteine (C) at position 394 (R394C, p.Arg394Cys). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from large size and basic (R) to medium size and polar (C) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In MCOPS12; increased transcriptional response to retinoic acid ligands. Any additional useful information about the variant.


Sequence information Variant position: help 394 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 455 The length of the canonical sequence.
Location on the sequence: help FPKILMKITDLRSISAKGAE R VITLKMEIPGSMPPLIQEML The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         FPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEML

Mouse                         FPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEML

Chicken                       FPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEML
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 455 Retinoic acid receptor beta
Domain 183 – 417 NR LBD
Helix 373 – 401



Literature citations
Recessive and dominant mutations in retinoic acid receptor beta in cases with microphthalmia and diaphragmatic hernia.
Srour M.; Chitayat D.; Caron V.; Chassaing N.; Bitoun P.; Patry L.; Cordier M.P.; Capo-Chichi J.M.; Francannet C.; Calvas P.; Ragge N.; Dobrzeniecka S.; Hamdan F.F.; Rouleau G.A.; Tremblay A.; Michaud J.L.;
Am. J. Hum. Genet. 93:765-772(2013)
Cited for: VARIANTS MCOPS12 SER-394 AND CYS-394; CHARACTERIZATION OF VARIANTS MCOPS12 SER-394 AND CYS-394; Gain-of-function mutations in RARB cause intellectual disability with progressive motor impairment.
Srour M.; Caron V.; Pearson T.; Nielsen S.B.; Levesque S.; Delrue M.A.; Becker T.A.; Hamdan F.F.; Kibar Z.; Sattler S.G.; Schneider M.C.; Bitoun P.; Chassaing N.; Rosenfeld J.A.; Xia F.; Desai S.; Roeder E.; Kimonis V.; Schneider A.; Littlejohn R.O.; Douzgou S.; Tremblay A.; Michaud J.L.;
Hum. Mutat. 37:786-793(2016)
Cited for: VARIANTS MCOPS12 PRO-220; ALA-303 AND CYS-394; CHARACTERIZATION OF VARIANT MCOPS12 PRO-220; ALA-303; SER-394 AND CYS-394;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.