UniProtKB/Swiss-Prot Q96T92: Variant p.Asp206Gly

Insulinoma-associated protein 2
Gene: INSM2
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Variant information Variant position:

206 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Aspartate (D) to Glycine (G) at position 206 (D206G, p.Asp206Gly). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and acidic (D) to glycine (G) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs1958260 [ dbSNP | Ensembl ]

Sequence information Variant position:

206 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

566 The length of the canonical sequence.
Location on the sequence:

AALQSLKRAAGGERRGKAPT D CASGPAAAGIKKPKAMRKLS The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         AALQSLKRAAGGERRGKAPTDCASGPAAAGIKKPKAMRKLS

Mouse                         ---------HGLQRRGKGAPVCASAPAA--VRKPKAVRRLS

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 566	Insulinoma-associated protein 2

Literature citations
A novel insulinoma-associated gene IA-6 with C2H2-type zinc finger motifs expressed in neuroendocrine tissues.
Cai T.; Notkins A.L.;
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; VARIANT GLY-206; Insm2 is expressed in the developing mammalian retina.
Halford S.; Broadgate S.L.;
Cited for: NUCLEOTIDE SEQUENCE [MRNA]; VARIANT GLY-206; Neuroblastoma oligo-capping cDNA project: toward the understanding of the genesis and biology of neuroblastoma.
Ohira M.; Morohashi A.; Nakamura Y.; Isogai E.; Furuya K.; Hamano S.; Machida T.; Aoyama M.; Fukumura M.; Miyazaki K.; Suzuki Y.; Sugano S.; Hirato J.; Nakagawara A.;
Cancer Lett. 197:63-68(2003)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]; VARIANT GLY-206; Submission
Mural R.J.; Istrail S.; Sutton G.G.; Florea L.; Halpern A.L.; Mobarry C.M.; Lippert R.; Walenz B.; Shatkay H.; Dew I.; Miller J.R.; Flanigan M.J.; Edwards N.J.; Bolanos R.; Fasulo D.; Halldorsson B.V.; Hannenhalli S.; Turner R.; Yooseph S.; Lu F.; Nusskern D.R.; Shue B.C.; Zheng X.H.; Zhong F.; Delcher A.L.; Huson D.H.; Kravitz S.A.; Mouchard L.; Reinert K.; Remington K.A.; Clark A.G.; Waterman M.S.; Eichler E.E.; Adams M.D.; Hunkapiller M.W.; Myers E.W.; Venter J.C.;
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]; VARIANT GLY-206; The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The MGC Project Team;
Genome Res. 14:2121-2127(2004)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]; VARIANT GLY-206;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.