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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9NP58: Variant p.Ala453Val

ATP-binding cassette sub-family B member 6
Gene: ABCB6
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Variant information Variant position: help 453 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Alanine (A) to Valine (V) at position 453 (A453V, p.Ala453Val). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from small size and hydrophobic (A) to medium size and hydrophobic (V) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In DUH3. Any additional useful information about the variant.


Sequence information Variant position: help 453 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 842 The length of the canonical sequence.
Location on the sequence: help EWRTKFRRAMNTQENATRAR A VDSLLNFETVKYYNAESYEV The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         EWRTKFRRAMNTQENATRARAVDSLLNFETVKYYNAESYEV

Mouse                         EWRAKFRRDMNTQENATRARAVDSLLNFETVKYYGAEGYEV

Rat                           EWRAKFRRDMNTQENATRARAVDSLLNFETVKYYNAEGYEL

Xenopus tropicalis            EWRTKYRREMNTRDNEAKSRAVDSLLNFETVKYYNAEGYEV

Slime mold                    ERRTKHRRLANKKENEASDIKVDSLMNFETIKYFTAESYER
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 842 ATP-binding cassette sub-family B member 6
Topological domain 419 – 499 Cytoplasmic
Domain 265 – 556 ABC transmembrane type-1
Mutagenesis 447 – 447 N -> Q. Does not affect N-glycosylation. Does not affect N-glycosylation; when associated with Q-498; Q-677 and Q-775. Does not affect trafficking from endoplasmic reticulum; when associated with Q-498; Q-677 and Q-775.
Helix 411 – 458



Literature citations
Genome-wide linkage, exome sequencing and functional analyses identify ABCB6 as the pathogenic gene of dyschromatosis universalis hereditaria.
Liu H.; Li Y.; Hung K.K.; Wang N.; Wang C.; Chen X.; Sheng D.; Fu X.; See K.; Foo J.N.; Low H.; Liany H.; Irwan I.D.; Liu J.; Yang B.; Chen M.; Yu Y.; Yu G.; Niu G.; You J.; Zhou Y.; Ma S.; Wang T.; Yan X.; Goh B.K.; Common J.E.; Lane B.E.; Sun Y.; Zhou G.; Lu X.; Wang Z.; Tian H.; Cao Y.; Chen S.; Liu Q.; Liu J.; Zhang F.;
PLoS ONE 9:E87250-E87250(2014)
Cited for: VARIANT DUH3 VAL-453;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.