UniProtKB/SwissProt variant VAR

Variant information

Variant position:

884

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

Disease [Disclaimer]

The variants are classified into three categories: Disease, Polymorphism and Unclassified.

Disease: Variants implicated in disease according to literature reports.
Polymorphism: Variants not reported to be implicated in disease.
Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:

From Isoleucine (I) to Serine (S) at position 884 (I884S, p.Ile884Ser).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and hydrophobic (I) to small size and polar (S)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-2

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Involvement in disease:

Premature ovarian failure 9 (POF9) [MIM:615724]: An ovarian disorder defined as the cessation of ovarian function under the age of 40 years. It is characterized by oligomenorrhea or amenorrhea, in the presence of elevated levels of serum gonadotropins and low estradiol. {ECO:0000303|PubMed:24597873}. Note=The disease may be caused by mutations affecting the gene represented in this entry.

The name and a short description of the disease associated with the variant. For more information about the disease, the user can refer to OMIM, following the link provided after the disease acronym.

Variant description:

In POF9.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs587777268 [ dbSNP | Ensembl ]

Sequence information

Variant position:

884

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

1435

The length of the canonical sequence.

Location on the sequence:

QAQLGCIPIQDFALTQDTAK I FRHGSRITRWLSDFVAAQEK

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         QAQLGCIPIQDF--------ALTQDTAKIFRHGSRITRWLSDFVAAQEK

Mouse                         QAQLGCIPIQDF--------ALTQDTVKIFRNGSRIARWLS

Xenopus tropicalis            QAHLGCILVQDF--------SLTQDISKIFRHGTRLAKCLS

Baker's yeast                 QYELGGLEFPSYEGASKLHQTLVQDKFLVFRHCFRLLKCMV

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 1435	Probable ATP-dependent DNA helicase HFM1
Domain	777 – 1092	SEC63

Literature citations

Mutations in HFM1 in recessive primary ovarian insufficiency.
Wang J.; Zhang W.; Jiang H.; Wu B.L.; Wu B.L.; An Y.; Wu B.; Yu L.; Zhou W.; Jiang H.; Zhang W.; Song X.; Zhang W.; Jiang H.; Wu J.; Pu D.; Zhang M.; Wu B.L.; Shen Y.; Wu B.L.; Wang J.; Zhang W.; Shen Y.; Lin C.; Grimmett L.; Liao E.; Shao H.; Shen X.; Platt O.;
N. Engl. J. Med. 370:972-974(2014)
Cited for: POSSIBLE INVOLVEMENT IN POF9; VARIANTS POF9 SER-736 AND SER-884;

UniProtKB/Swiss-Prot A2PYH4: Variant p.Ile884Ser