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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P00492: Variant p.Thr124Pro

Hypoxanthine-guanine phosphoribosyltransferase
Gene: HPRT1
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Variant information Variant position: help 124 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Threonine (T) to Proline (P) at position 124 (T124P, p.Thr124Pro). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (T) to medium size and hydrophobic (P) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In HRH; Asia. Any additional useful information about the variant.


Sequence information Variant position: help 124 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 218 The length of the canonical sequence.
Location on the sequence: help SYCNDQSTGDIKVIGGDDLS T LTGKNVLIVEDIIDTGKTMQ The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         SYCND-QSTG-DIKVIGGDDLST-----LTGKNVLIVEDIIDTGKTMQ

                              SYCND-QSTG-DIKVIGGDDLST-----LTGKNVLIVEDII

Chimpanzee                    SYCND-QSTG-DTKVIGGDDLST-----LTGKNVLIVEDII

Mouse                         SYCND-QSTG-DIKVIGGDDLST-----LTGKNVLIVEDII

Rat                           SYCND-QSTG-DIKVIGGDDLST-----LTGKNVLIVEDII

Pig                           SYCND-QSTG-DIKVIGGDDLST-----LTGKNVLIVEDII

Bovine                        SYCND-QSTG-DIKVIGGDDLST-----LTGKNVLIVEDII

Chicken                       SYCND-QSTG-DIKVIGGDDLST-----LTGKNVLIVEDII

Slime mold                    SYGAETSSSG-VIRIM--MDLRT----SIEGKDVLIIEDIV

Baker's yeast                 SVGSEVEEVGVKVSRTQWIDYEQCKL-DLVGKNVLIVDEVD

Fission yeast                 SDSPE-EVPGLEVKRTQWLDFSTLGMVDLVGKNILIVDEVD
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 2 – 218 Hypoxanthine-guanine phosphoribosyltransferase
Active site 138 – 138 Proton acceptor
Modified residue 142 – 142 Phosphothreonine
Cross 115 – 115 Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1); alternate
Cross 115 – 115 Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate
Helix 123 – 125



Literature citations
Molecular analysis of HPRT deficiencies: an update of the spectrum of Asian mutations with novel mutations.
Yamada Y.; Nomura N.; Yamada K.; Wakamatsu N.;
Mol. Genet. Metab. 90:70-76(2007)
Cited for: VARIANTS LNS VAL-8 DEL; TYR-28 DEL; PRO-64; PRO-65; GLU-70; CYS-72; GLN-78; PRO-147; GLU-159; VAL-159 INS AND ALA-188; VARIANTS HRH PRO-124; GLY-185; VAL-192 AND CYS-195;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.