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UniProtKB/Swiss-Prot Q9BWX5: Variant p.Arg187Gly

Transcription factor GATA-5
Gene: GATA5
Variant information

Variant position:  187
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Arginine (R) to Glycine (G) at position 187 (R187G, p.Arg187Gly).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from large size and basic (R) to glycine (G)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In CHTD5; decreased transcriptional activity.
Any additional useful information about the variant.



Sequence information

Variant position:  187
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  397
The length of the canonical sequence.

Location on the sequence:   LPGRRPTFVSDFLEEFPGEG  R ECVNCGALSTPLWRRDGTGH
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         LPGRRPTFVSDFLEEFPGEGRECVNCGALSTPLWRRDGTGH

Mouse                         LPGRRTSFVPDFLEEFPGEGRECVNCGALSTPLWRRDGTGH

Bovine                        LPGRRAPFAAELLEEFPGEGRECVNCGALSTPLWRRDGTGH

Chicken                       LPGRRSTF--EYLEEFPGDGRECVNCGAMSTPLWRKDGTGH

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 397 Transcription factor GATA-5


Literature citations

GATA5 loss-of-function mutations underlie tetralogy of fallot.
Wei D.; Bao H.; Liu X.Y.; Zhou N.; Wang Q.; Li R.G.; Xu Y.J.; Yang Y.Q.;
Int. J. Med. Sci. 10:34-42(2013)
Cited for: INVOLVEMENT IN CHTD5; VARIANTS CHTD5 GLY-187 AND ARG-207; CHARACTERIZATION OF CHTD5 VARIANTS GLY-187 AND ARG-207; FUNCTION;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.