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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9H0P0: Variant p.Ile297Thr

Cytosolic 5'-nucleotidase 3A
Gene: NT5C3A
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Variant information Variant position: help 297 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Isoleucine (I) to Threonine (T) at position 297 (I297T, p.Ile297Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and hydrophobic (I) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In P5ND. Any additional useful information about the variant.


Sequence information Variant position: help 297 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 336 The length of the canonical sequence.
Location on the sequence: help DSQGDLRMADGVANVEHILK I GYLNDRVDELLEKYMDSYDI The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         DSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDI

Mouse                         DSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDI

Chicken                       DSQGDLSMADGVANVEHILKIGYLNDKVDELLEKYMDSYDI
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 336 Cytosolic 5'-nucleotidase 3A
Binding site 277 – 277
Modified residue 278 – 278 Phosphoserine
Beta strand 292 – 300



Literature citations
Molecular characterization of five Portuguese patients with pyrimidine 5'-nucleotidase deficient hemolytic anemia showing three new P5'N-I mutations.
Manco L.; Relvas L.; Silva Pinto C.; Pereira J.; Almeida A.B.; Ribeiro M.L.;
Haematologica 91:266-267(2006)
Cited for: VARIANTS P5ND PRO-181; ARG-207 AND THR-297; Molecular basis of pyrimidine 5'-nucleotidase deficiency caused by 3 newly identified missense mutations (c.187T>C, c.469G>C and c.740T>C) and a tabulation of known mutations.
Chiarelli L.R.; Morera S.M.; Galizzi A.; Fermo E.; Zanella A.; Valentini G.;
Blood Cells Mol. Dis. 40:295-301(2008)
Cited for: CHARACTERIZATION OF VARIANTS P5ND ARG-113; ARG-207 AND THR-297;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.