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UniProtKB/Swiss-Prot Q9BXS0: Variant p.Gly382Arg

Collagen alpha-1(XXV) chain
Gene: COL25A1
Variant information

Variant position:  382
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Disease [Disclaimer]
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Glycine (G) to Arginine (R) at position 382 (G382R, p.Gly382Arg).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from glycine (G) to large size and basic (R)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -2
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Involvement in disease:  Fibrosis of extraocular muscles, congenital, 5 (CFEOM5) [MIM:616219]: An ocular motility disorder characterized by congenital dysinnervation of various cranial nerves to ocular muscles. Clinical features are ophthalmoplegia, anchoring of the eyes in downward gaze, ptosis, and backward tilt of the head. {ECO:0000269|PubMed:25500261}. Note=The disease is caused by mutations affecting the gene represented in this entry.
The name and a short description of the disease associated with the variant. For more information about the disease, the user can refer to OMIM, following the link provided after the disease acronym.

Variant description:  In CFEOM5; causes loss of stability; causes incorrect folding.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  382
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  654
The length of the canonical sequence.

Location on the sequence:   GERGEAGPPGRGERGEPGAP  G PKGKQGESGTRGPKGSKGDR
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         GERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDR

Mouse                         GDRGEAGPPGRGERGDPGAPGPKGKQGESGARGPKGSKGDR

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 654 Collagen alpha-1(XXV) chain
Chain 113 – 654 Collagen-like Alzheimer amyloid plaque component
Topological domain 55 – 654 Extracellular
Domain 372 – 425 Collagen-like 5


Literature citations

Recessive mutations in COL25A1 are a cause of congenital cranial dysinnervation disorder.
Shinwari J.M.; Khan A.; Awad S.; Shinwari Z.; Alaiya A.; Alanazi M.; Tahir A.; Poizat C.; Al Tassan N.;
Am. J. Hum. Genet. 96:147-152(2015)
Cited for: INVOLVEMENT IN CFEOM5; VARIANT CFEOM5 ARG-382; CHARACTERIZATION OF VARIANT CFEOM5 ARG-382;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.