UniProtKB/SwissProt variant VAR

Variant information

Variant position:

34

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LP/P [Disclaimer]

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Threonine (T) to Methionine (M) at position 34 (T34M, p.Thr34Met).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and polar (T) to medium size and hydrophobic (M)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-1

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In GBD1; reduces efflux activity for PC in a phosphorylation-dependent manner.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs142794414 [ dbSNP | Ensembl ]

Sequence information

Variant position:

34

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

1286

The length of the canonical sequence.

Location on the sequence:

PTSAEGDFELGISSKQKRKK T KTVKMIGVLTLFRYSDWQDK

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 1286	Phosphatidylcholine translocator ABCB4
Topological domain	1 – 50	Cytoplasmic
Modified residue	27 – 27	Phosphoserine
Modified residue	34 – 34	Phosphothreonine
Mutagenesis	34 – 34	T -> D. Does not inhibit efflux activity for PC.
Mutagenesis	44 – 44	T -> A. Reduces efflux activity for PC. Does not alter apical membrane location.
Mutagenesis	49 – 49	S -> A. Reduces efflux activity for PC. Does not alter apical membrane location.

Literature citations

Aspects of liver pathology in adult patients with MDR3/ABCB4 gene mutations.
Wendum D.; Barbu V.; Rosmorduc O.; Arrive L.; Flejou J.F.; Poupon R.;
Virchows Arch. 460:291-298(2012)
Cited for: VARIANTS GBD1 MET-34; GLY-47; VAL-286 AND ASP-528; VARIANTS GLN-47; ALA-175; PHE-320; GLN-406; MET-775 AND THR-964;

Phosphorylation of ABCB4 impacts its function: insights from disease-causing mutations.
Gautherot J.; Delautier D.; Maubert M.A.; Ait-Slimane T.; Bolbach G.; Delaunay J.L.; Durand-Schneider A.M.; Firrincieli D.; Barbu V.; Chignard N.; Housset C.; Maurice M.; Falguieres T.;
Hepatology 60:610-621(2014)
Cited for: VARIANTS GBD1 MET-34 AND GLY-47; CHARACTERIZATION OF VARIANTS GBD1 MET-34 AND GLY-47; FUNCTION; SUBCELLULAR LOCATION; PHOSPHORYLATION AT THR-34; GLYCOSYLATION; MUTAGENESIS OF THR-34; THR-44 AND SER-49; IDENTIFICATION BY MASS SPECTROMETRY;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P21439: Variant p.Thr34Met