Variant position: 44 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 599 The length of the canonical sequence.
Location on the sequence:
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human NDKPKTLVVKVQKKAADLPD RDTWKGRFDFLMSCVGYAIGL
Mouse SDKPKTLVVKVQKKAGDLPD RDTWKGRFDFLMSCVGYAIGL
Rat SDKPKTLVVKVQKKAGDLPD RDTWKGRFDFLMSCVGYAIGL
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
1 – 599 Sodium- and chloride-dependent GABA transporter 1
1 – 52 Cytoplasmic
59 – 59 Sodium 1; via carbonyl oxygen
61 – 61 Sodium 2; via carbonyl oxygen
62 – 62 Sodium 1; via carbonyl oxygen
Mutations in the GABA Transporter SLC6A1 Cause Epilepsy with Myoclonic-Atonic Seizures.
Carvill G.L.; McMahon J.M.; Schneider A.; Zemel M.; Myers C.T.; Saykally J.; Nguyen J.; Robbiano A.; Zara F.; Specchio N.; Mecarelli O.; Smith R.L.; Leventer R.J.; Moeller R.S.; Nikanorova M.; Dimova P.; Jordanova A.; Petrou S.; Helbig I.; Striano P.; Weckhuysen S.; Berkovic S.F.; Scheffer I.E.; Mefford H.C.;
Am. J. Hum. Genet. 96:808-815(2015)
Cited for: INVOLVEMENT IN MAE; VARIANTS MAE GLN-44; VAL-288; ARG-297 AND PRO-334;
Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.