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UniProtKB/Swiss-Prot P11362: Variant p.Ser96Cys

Fibroblast growth factor receptor 1
Gene: FGFR1
Variant information

Variant position:  96
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  US
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Serine (S) to Cysteine (C) at position 96 (S96C, p.Ser96Cys).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from small size and polar (S) to medium size and polar (C)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -1
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In HH2; unknown pathological significance.
Any additional useful information about the variant.



Sequence information

Variant position:  96
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  822
The length of the canonical sequence.

Location on the sequence:   SNRTRITGEEVEVQDSVPAD  S GLYACVTSSPSGSDTTYFSV
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 22 – 822 Fibroblast growth factor receptor 1
Topological domain 22 – 376 Extracellular
Domain 25 – 119 Ig-like C2-type 1
Glycosylation 77 – 77 N-linked (GlcNAc...) asparagine
Disulfide bond 55 – 101
Alternative sequence 1 – 160 Missing. In isoform 10, isoform 11, isoform 12 and isoform 13.
Alternative sequence 31 – 119 Missing. In isoform 6, isoform 7, isoform 8, isoform 9, isoform 15, isoform 17 and isoform 18.
Alternative sequence 62 – 822 Missing. In isoform 3.


Literature citations

Novel FGFR1 mutations in Kallmann syndrome and normosmic idiopathic hypogonadotropic hypogonadism: evidence for the involvement of an alternatively spliced isoform.
Goncalves C.; Bastos M.; Pignatelli D.; Borges T.; Araguees J.M.; Fonseca F.; Pereira B.D.; Socorro S.; Lemos M.C.;
Fertil. Steril. 0:0-0(2015)
Cited for: VARIANTS HH2 CYS-4; CYS-96 AND VAL-719; VARIANT HH2 THR-353 (ISOFORM 19);

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.