UniProtKB/Swiss-Prot O00206: Variant p.Glu287Asp

Toll-like receptor 4
Gene: TLR4
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Variant information Variant position:

287 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Glutamate (E) to Aspartate (D) at position 287 (E287D, p.Glu287Asp). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Similar physico-chemical property. Both residues are medium size and acidic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Polymorphism:

Allele TLR4*B (Gly-299, Ile-399) is associated with a blunted response to inhaled LPS. Additional information on the polymorphism described.

Sequence information Variant position:

287 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

839 The length of the canonical sequence.
Location on the sequence:

GNLEKFDKSALEGLCNLTIE E FRLAYLDYYLDDIIDLFNCL The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         GNLEKFDKSALEGLCNLTIEEFRLAYLDYY-LDDIIDLFNCL

Gorilla                       GNLEKFDKSALEGLCNLTIEEFRLAYLDYY-LDDIIDLFNC

Mouse                         RNLEIFEPSIMEGLCDVTIDEFRLTYTNDF-SDDIVK-FHC

Rat                           RNLESFDRSVMEGLCNVSIDEFRLTYINHF-SDDIYN-LNC

Pig                           RNLESFDKSVLEELCNLTLEQFRIAHFGEF-PDDVSDLFNC

Bovine                        RKLQRFDRSFLEGLCNLTIEQFRIAYLDKF-SGDDTDLFNC

Cat                           RNLGRFDKSILEGLCNLIIEKFRIAYFDKF-SEDAIDSFNC

Horse                         RKLERFDTSALRGLHNLTIEEFRLAYIDNYSSKDSIDLLNC

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	24 – 839	Toll-like receptor 4
Topological domain	24 – 631	Extracellular
Glycosylation	282 – 282	N-linked (GlcNAc...) asparagine
Disulfide bond	281 – 306
Beta strand	283 – 292

Literature citations
Neomorphic effects of recurrent somatic mutations in Yin Yang 1 in insulin-producing adenomas.
Cromer M.K.; Choi M.; Nelson-Williams C.; Fonseca A.L.; Kunstman J.W.; Korah R.M.; Overton J.D.; Mane S.; Kenney B.; Malchoff C.D.; Stalberg P.; Akerstroem G.; Westin G.; Hellman P.; Carling T.; Bjoerklund P.; Lifton R.P.;
Proc. Natl. Acad. Sci. U.S.A. 112:4062-4067(2015)
Cited for: VARIANT ASP-287;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.