Expasy logo

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P56192: Variant p.Ala393Thr

Methionine--tRNA ligase, cytoplasmic
Gene: MARS1
Feedback?
Variant information Variant position: help 393 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Alanine (A) to Threonine (T) at position 393 (A393T, p.Ala393Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from small size and hydrophobic (A) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In ILLD; may act as a disease modifier aggravating the phenotype; found in patients that carried additional mutations C-344 and/or L-567; when assayed in yeast, does not exhibit any phenotype; when assayed in yeast in association with L-567, increases L-567-induced growth retardation and reduction in methionine incorporation. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 393 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 900 The length of the canonical sequence.
Location on the sequence: help LLKRGFVLQDTVEQLRCEHC A RFLADRFVEGVCPFCGYEEA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         LLKRGFVLQDTVEQLRCEH-CARFLADRFVEGVCPFCGYEEA

Mouse                         LLTRGFVLRDTVEQLRCER-CARFLADRFVEGVCPFCGYEE

Bovine                        LLARGFVLQDTVEQLRCEH-CARFLADRFVEGVCPFCGYEE

Xenopus laevis                LLEREFLLTDTVEQLRCEK-CQRFLADRFVEGICPFCNYEE

Caenorhabditis elegans        LHKNGYTSSQSVDQLYCNQ-CEKFLADRFVTGTCPMCAYDD

Slime mold                    IKDNGYTLTQEIEQLYCEQTCKMFLADRFVEGTCPHCKFED

Baker's yeast                 LNSNGYLEEQSMKQLYCPV-HNSYLADRYVEGECPKCHYDD

Fission yeast                 LYNNDYMAIDTMTQLYCEV-HQGYLADRYVEGTCPKCGYDD
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 900 Methionine--tRNA ligase, cytoplasmic
Turn 390 – 393



Literature citations
Biallelic mutations of methionyl-tRNA synthetase cause a specific type of pulmonary alveolar proteinosis prevalent on Reunion island.
Hadchouel A.; Wieland T.; Griese M.; Baruffini E.; Lorenz-Depiereux B.; Enaud L.; Graf E.; Dubus J.C.; Halioui-Louhaichi S.; Coulomb A.; Delacourt C.; Eckstein G.; Zarbock R.; Schwarzmayr T.; Cartault F.; Meitinger T.; Lodi T.; de Blic J.; Strom T.M.;
Am. J. Hum. Genet. 96:826-831(2015)
Cited for: VARIANTS ILLD CYS-344; THR-393; LEU-567 AND VAL-605; VARIANTS LEU-206 AND GLN-727;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.