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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P35523: Variant p.Leu628Pro

Chloride channel protein 1
Gene: CLCN1
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Variant information Variant position: help 628 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help US The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Leucine (L) to Proline (P) at position 628 (L628P, p.Leu628Pro). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Similar physico-chemical property. Both residues are medium size and hydrophobic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description: help In MCAR; uncertain significance; no effect on calcium channel activity. Any additional useful information about the variant.


Sequence information Variant position: help 628 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 988 The length of the canonical sequence.
Location on the sequence: help IMVRDVKFVSASYTYGELRT L LQTTTVKTLPLVDSKDSMIL The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human                         IMVRDVKFVSASYTYGELRTLLQTTTVKTLPLVDSKDSMIL

                              IMVRDVKFVSATCTYGELRTLLQTTTVKTLPLVDSKDSMIL

Mouse                         IMVRDVKFVSASCTYGELRNLLQATTVKTLPLVDSKDSMIL

Rat                           IMVRDVKFVSASCTYGELRNLLQTTTVKTLPLVDSKDSMIL

Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 988 Chloride channel protein 1
Topological domain 579 – 988 Cytoplasmic
Domain 609 – 668 CBS 1
Helix 622 – 631



Literature citations
ClC-1 mutations in myotonia congenita patients: insights into molecular gating mechanisms and genotype-phenotype correlation.
Imbrici P.; Maggi L.; Mangiatordi G.F.; Dinardo M.M.; Altamura C.; Brugnoni R.; Alberga D.; Pinter G.L.; Ricci G.; Siciliano G.; Micheli R.; Annicchiarico G.; Lattanzi G.; Nicolotti O.; Morandi L.; Bernasconi P.; Desaphy J.F.; Mantegazza R.; Camerino D.C.;
J. Physiol. (Lond.) 593:4181-4199(2015)
Cited for: VARIANTS MCAD PRO-198 AND LEU-484; CHARACTERIZATION OF VARIANTS MCAD PRO-198 AND LEU-484; VARIANTS MCAR PRO-628 AND GLY-640; CHARACTERIZATION OF VARIANTS MCAR PRO-628 AND GLY-640;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.