Expasy logo

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P30084: Variant p.Phe33Ser

Enoyl-CoA hydratase, mitochondrial
Gene: ECHS1
Feedback?
Variant information Variant position: help 33 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Phenylalanine (F) to Serine (S) at position 33 (F33S, p.Phe33Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from large size and aromatic (F) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description: help In ECHS1D. Any additional useful information about the variant.


Sequence information Variant position: help 33 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 290 The length of the canonical sequence.
Location on the sequence: help GPLRPPVRCPAWRPFASGAN F EYIIAEKRGKNNTVGLIQLN The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human                         GPLRPPVRCPAWRPFASGANFEYIIAEKRGKNNTVGLIQLN

Mouse                         SSLLSSVRCPELRRFASGANFQYIITEKKGKNSSVGLIQLN

Rat                           NSLLSPVRCPEFRRFASGANFQYIITEKKGKNSSVGLIQLN

Bovine                        APLRPWLFCPVQRSFASSAAFEYIITAKKGRNSNVGLIQLN

Caenorhabditis elegans        AKLCANVNQMQVAAFSSKAP-EMIKIEKVGEKQNVALIKLN

Slime mold                    SSQAP--KKYFFKQFCTST------TEKKGR---VGLVTLN

Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 28 – 290 Enoyl-CoA hydratase, mitochondrial
Modified residue 46 – 46 Phosphothreonine



Literature citations
Deficiency of ECHS1 causes mitochondrial encephalopathy with cardiac involvement.
Haack T.B.; Jackson C.B.; Murayama K.; Kremer L.S.; Schaller A.; Kotzaeridou U.; de Vries M.C.; Schottmann G.; Santra S.; Buechner B.; Wieland T.; Graf E.; Freisinger P.; Eggimann S.; Ohtake A.; Okazaki Y.; Kohda M.; Kishita Y.; Tokuzawa Y.; Sauer S.; Memari Y.; Kolb-Kokocinski A.; Durbin R.; Hasselmann O.; Cremer K.; Albrecht B.; Wieczorek D.; Engels H.; Hahn D.; Zink A.M.; Alston C.L.; Taylor R.W.; Rodenburg R.J.; Trollmann R.; Sperl W.; Strom T.M.; Hoffmann G.F.; Mayr J.A.; Meitinger T.; Bolognini R.; Schuelke M.; Nuoffer J.M.; Koelker S.; Prokisch H.; Klopstock T.;
Ann. Clin. Transl. Neurol. 2:492-509(2015)
Cited for: VARIANTS ECHS1D SER-33; HIS-54; SER-59; THR-66; GLN-77; ARG-90; THR-132; GLY-150; ARG-159; SER-195; ARG-225 AND GLU-273; A comprehensive genomic analysis reveals the genetic landscape of mitochondrial respiratory chain complex deficiencies.
Kohda M.; Tokuzawa Y.; Kishita Y.; Nyuzuki H.; Moriyama Y.; Mizuno Y.; Hirata T.; Yatsuka Y.; Yamashita-Sugahara Y.; Nakachi Y.; Kato H.; Okuda A.; Tamaru S.; Borna N.N.; Banshoya K.; Aigaki T.; Sato-Miyata Y.; Ohnuma K.; Suzuki T.; Nagao A.; Maehata H.; Matsuda F.; Higasa K.; Nagasaki M.; Yasuda J.; Yamamoto M.; Fushimi T.; Shimura M.; Kaiho-Ichimoto K.; Harashima H.; Yamazaki T.; Mori M.; Murayama K.; Ohtake A.; Okazaki Y.;
PLoS Genet. 12:E1005679-E1005679(2016)
Cited for: VARIANTS ECHS1D SER-33; SER-59 AND ARG-159;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.