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UniProtKB/Swiss-Prot P30084: Variant p.Ala132Thr

Enoyl-CoA hydratase, mitochondrial
Gene: ECHS1
Variant information

Variant position:  132
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Disease [Disclaimer]
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Alanine (A) to Threonine (T) at position 132 (A132T, p.Ala132Thr).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from small size and hydrophobic (A) to medium size and polar (T)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  0
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Involvement in disease:  Mitochondrial short-chain enoyl-CoA hydratase 1 deficiency (ECHS1D) [MIM:616277]: A severe, autosomal recessive inborn error affecting valine metabolism. Disease features include brain lesions in the basal ganglia, neurodegeneration, delayed psychomotor development, hypotonia, spasticity, and increased lactic acid in serum and cerebral serum fluid. {ECO:0000269|PubMed:25125611, ECO:0000269|PubMed:25393721, ECO:0000269|PubMed:26000322, ECO:0000269|PubMed:26251176, ECO:0000269|PubMed:26741492, ECO:0000269|PubMed:27221955}. Note=The disease is caused by mutations affecting the gene represented in this entry.
The name and a short description of the disease associated with the variant. For more information about the disease, the user can refer to OMIM, following the link provided after the disease acronym.

Variant description:  In ECHS1D.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  132
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  290
The length of the canonical sequence.

Location on the sequence:   YSSKFLKHWDHLTQVKKPVI  A AVNGYAFGGGCELAMMCDII
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         YSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDII

Mouse                         YSSKFLSHWDHITRVKKPVIAAVNGYALGGGCELAMMCDII

Rat                           YSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDII

Bovine                        YSGGFLSHWDQLTRVKKPVIAAVNGYALGGGCELAMMCDII

Caenorhabditis elegans        FSGSFLSNWTAVSDVKKPVIAAVNGFALGGGNELAMMCDII

Slime mold                    YNNDLLAQWHDLTKIRKPIIAAVNGYALGGGCELAMMCDII

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 28 – 290 Enoyl-CoA hydratase, mitochondrial
Binding site 141 – 141 Substrate; via amide nitrogen
Modified residue 114 – 114 Phosphoserine
Modified residue 115 – 115 N6-acetyllysine; alternate
Modified residue 115 – 115 N6-succinyllysine; alternate
Modified residue 118 – 118 N6-acetyllysine
Beta strand 130 – 134


Literature citations

Deficiency of ECHS1 causes mitochondrial encephalopathy with cardiac involvement.
Haack T.B.; Jackson C.B.; Murayama K.; Kremer L.S.; Schaller A.; Kotzaeridou U.; de Vries M.C.; Schottmann G.; Santra S.; Buechner B.; Wieland T.; Graf E.; Freisinger P.; Eggimann S.; Ohtake A.; Okazaki Y.; Kohda M.; Kishita Y.; Tokuzawa Y.; Sauer S.; Memari Y.; Kolb-Kokocinski A.; Durbin R.; Hasselmann O.; Cremer K.; Albrecht B.; Wieczorek D.; Engels H.; Hahn D.; Zink A.M.; Alston C.L.; Taylor R.W.; Rodenburg R.J.; Trollmann R.; Sperl W.; Strom T.M.; Hoffmann G.F.; Mayr J.A.; Meitinger T.; Bolognini R.; Schuelke M.; Nuoffer J.M.; Koelker S.; Prokisch H.; Klopstock T.;
Ann. Clin. Transl. Neurol. 2:492-509(2015)
Cited for: VARIANTS ECHS1D SER-33; HIS-54; SER-59; THR-66; GLN-77; ARG-90; THR-132; GLY-150; ARG-159; SER-195; ARG-225 AND GLU-273;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.