Expasy logo

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q70HW3: Variant p.Pro199Leu

Mitochondrial S-adenosylmethionine carrier protein
Gene: SLC25A26
Feedback?
Variant information Variant position: help 199 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Proline (P) to Leucine (L) at position 199 (P199L, p.Pro199Leu). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Similar physico-chemical property. Both residues are medium size and hydrophobic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In COXPD28; loss of S-adenosyl-L-methionine/S-adenosyl-L-homocysteine antiporter activity. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 199 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 274 The length of the canonical sequence.
Location on the sequence: help SWQSAVCGAFAGGFAAAVTT P LDVAKTRITLAKAGSSTADG The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         SWQSAVCGAFAGGFAAAVTTPLDVAKTRITLAKAGSSTADG

Mouse                         SWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTAVG

Bovine                        SWQAAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTASG

Xenopus laevis                CWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSGVANG

Xenopus tropicalis            SWQSAVCGAFAGGFAAALTTPLDVAKTRIMLAKAGSGVASG

Zebrafish                     SWQAAVCGALAGGVAAFVTTPLDVAKTWIMLAKAGTSTASG

Drosophila                    PFSVALCGAVAGGISAGLTTPLDVVKTRIMLAERESLNRRR
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 274 Mitochondrial S-adenosylmethionine carrier protein
Transmembrane 182 – 202 Helical; Name=5
Repeat 177 – 265 Solcar 3
Alternative sequence 155 – 274 Missing. In isoform 3.



Literature citations
Intra-mitochondrial methylation deficiency due to mutations in SLC25A26.
Kishita Y.; Pajak A.; Bolar N.A.; Marobbio C.M.; Maffezzini C.; Miniero D.V.; Monne M.; Kohda M.; Stranneheim H.; Murayama K.; Naess K.; Lesko N.; Bruhn H.; Mourier A.; Wibom R.; Nennesmo I.; Jespers A.; Govaert P.; Ohtake A.; Van Laer L.; Loeys B.L.; Freyer C.; Palmieri F.; Wredenberg A.; Okazaki Y.; Wedell A.;
Am. J. Hum. Genet. 97:761-768(2015)
Cited for: INVOLVEMENT IN COXPD28; VARIANTS COXPD28 VAL-102; GLY-148 AND LEU-199; CHARACTERIZATION OF VARIANTS COXPD28 VAL-102; GLY-148 AND LEU-199; FUNCTION; TRANSPORTER ACTIVITY; SUBCELLULAR LOCATION;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.