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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q15149: Variant p.Gly3945Ser

Plectin
Gene: PLEC
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Variant information Variant position: help 3945 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Glycine (G) to Serine (S) at position 3945 (G3945S, p.Gly3945Ser). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from glycine (G) to small size and polar (S) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In LGMDR17. Any additional useful information about the variant.


Sequence information Variant position: help 3945 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 4684 The length of the canonical sequence.
Location on the sequence: help KELIPTEEALRLLDAQLATG G IVDPRLGFHLPLEVAYQRGY The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         KELIPTEEALRLLDAQLATGGIVDPRLGFHLPLEVAYQRGY

Mouse                         KELIPAEEALRLLDAQLATGGIVDPRLGFHLPLEVAYQRGY

Rat                           KELIPAEEALRLLDAQLATGGIVDPRLGFHLPLEVAYQRGY
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 4684 Plectin
Repeat 3934 – 3971 Plectin 20
Region 2756 – 4684 Globular 2



Literature citations
Report of a patient with limb-girdle muscular dystrophy, ptosis and ophthalmoparesis caused by plectinopathy.
Fattahi Z.; Kahrizi K.; Nafissi S.; Fadaee M.; Abedini S.S.; Kariminejad A.; Akbari M.R.; Najmabadi H.;
Arch. Iran. Med. 18:60-64(2015)
Cited for: VARIANT TRP-2005; VARIANT LGMDR17 SER-3945; Improved diagnostic yield of neuromuscular disorders applying clinical exome sequencing in patients arising from a consanguineous population.
Fattahi Z.; Kalhor Z.; Fadaee M.; Vazehan R.; Parsimehr E.; Abolhassani A.; Beheshtian M.; Zamani G.; Nafissi S.; Nilipour Y.; Akbari M.R.; Kahrizi K.; Kariminejad A.; Najmabadi H.;
Clin. Genet. 91:386-402(2017)
Cited for: VARIANT LGMDR17 SER-3945;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.