UniProtKB/Swiss-Prot Q9HBZ2: Variant p.Arg402Gln

Aryl hydrocarbon receptor nuclear translocator 2
Gene: ARNT2
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Variant information Variant position:

402 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Arginine (R) to Glutamine (Q) at position 402 (R402Q, p.Arg402Gln). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from large size and basic (R) to medium size and polar (Q) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description:

Does not affect the transcription factor activity. Any additional useful information about the variant.
Other resources:

Links to websites of interest for the variant.

Variant rs141193900 [ dbSNP | Ensembl ]

Sequence information Variant position:

402 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

717 The length of the canonical sequence.
Location on the sequence:

LRESFQQVVKLKGQVLSVMY R FRTKNREWMLIRTSSFTFQN The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         LRESFQQVVKLKGQVLSVMYRFRTKNREWMLIRTSSFTFQN

Mouse                         LRESFQQVVKLKGQVLSVMYRFRTKNREWLLIRTSSFTFQN

Rat                           LRESFQQVVKLKGQVLSVMYRFRTKNREWLLIRTSSFTFQN

Zebrafish                     LRESFQQVVKLKGQVLSVMYRFRMKNREWMLIRTSSFTFQN

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 717	Aryl hydrocarbon receptor nuclear translocator 2
Domain	398 – 441	PAC

Literature citations
Human variants in the neuronal basic helix-loop-helix/Per-Arnt-Sim (bHLH/PAS) transcription factor complex NPAS4/ARNT2 disrupt function.
Bersten D.C.; Bruning J.B.; Peet D.J.; Whitelaw M.L.;
PLoS ONE 9:E85768-E85768(2014)
Cited for: VARIANTS TRP-46; HIS-107; GLN-402 AND ARG-410; CHARACTERIZATION OF VARIANTS TRP-46; HIS-107; GLN-402 AND ARG-410; SUBCELLULAR LOCATION; SUBUNIT;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.