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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q96BN8: Variant p.Leu272Pro

Ubiquitin thioesterase otulin
Gene: OTULIN
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Variant information Variant position: help 272 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Leucine (L) to Proline (P) at position 272 (L272P, p.Leu272Pro). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Similar physico-chemical property. Both residues are medium size and hydrophobic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In AIPDS and IMD107; decreased stability; impaired ability to mediate deubiquitination of linear polyubiquitin chains; loss of NF-kappa-B inhibition and increased NF-kappa-B signaling; does not affect ability to interact with RNF31. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 272 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 352 The length of the canonical sequence.
Location on the sequence: help EVPFFSVLLFARDTSNDPGQ L LRNHLNQVGHTGGLEQVEMF The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         EVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMF

Mouse                         EVPFFSVLLFARDTSNDPEQLLRNHLNQVGHTGGLEQVEMF
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 352 Ubiquitin thioesterase otulin
Domain 118 – 346 OTU
Mutagenesis 254 – 254 P -> S. Severely decreased NF-kappa-B inhibition and increased NF-kappa-B signaling.
Mutagenesis 259 – 259 L -> E. Decreased affinity for linear diubiquitin.
Mutagenesis 281 – 281 G -> R. Severely decreased NF-kappa-B inhibition and increased NF-kappa-B signaling.
Helix 269 – 275



Literature citations
The deubiquitinase OTULIN is an essential negative regulator of inflammation and autoimmunity.
Damgaard R.B.; Walker J.A.; Marco-Casanova P.; Morgan N.V.; Titheradge H.L.; Elliott P.R.; McHale D.; Maher E.R.; McKenzie A.N.; Komander D.;
Cell 166:1215-1230(2016)
Cited for: INVOLVEMENT IN AIPDS; FUNCTION; INTERACTION WITH RNF31; VARIANT AIPDS PRO-272; CHARACTERIZATION OF VARIANT AIPDS PRO-272; Biallelic hypomorphic mutations in a linear deubiquitinase define otulipenia, an early-onset autoinflammatory disease.
Zhou Q.; Yu X.; Demirkaya E.; Deuitch N.; Stone D.; Tsai W.L.; Kuehn H.S.; Wang H.; Yang D.; Park Y.H.; Ombrello A.K.; Blake M.; Romeo T.; Remmers E.F.; Chae J.J.; Mullikin J.C.; Guezel F.; Milner J.D.; Boehm M.; Rosenzweig S.D.; Gadina M.; Welch S.B.; Oezen S.; Topaloglu R.; Abinun M.; Kastner D.L.; Aksentijevich I.;
Proc. Natl. Acad. Sci. U.S.A. 113:10127-10132(2016)
Cited for: INVOLVEMENT IN AIPDS; FUNCTION; VARIANTS AIPDS CYS-244 AND PRO-272; CHARACTERIZATION OF VARIANTS AIPDS CYS-244 AND PRO-272; Human OTULIN haploinsufficiency impairs cell-intrinsic immunity to staphylococcal alpha-toxin.
Spaan A.N.; Neehus A.L.; Laplantine E.; Staels F.; Ogishi M.; Seeleuthner Y.; Rapaport F.; Lacey K.A.; Van Nieuwenhove E.; Chrabieh M.; Hum D.; Migaud M.; Izmiryan A.; Lorenzo L.; Kochetkov T.; Heesterbeek D.A.C.; Bardoel B.W.; DuMont A.L.; Dobbs K.; Chardonnet S.; Heissel S.; Baslan T.; Zhang P.; Yang R.; Bogunovic D.; Wunderink H.F.; Haas P.A.; Molina H.; Van Buggenhout G.; Lyonnet S.; Notarangelo L.D.; Seppaenen M.R.J.; Weil R.; Seminario G.; Gomez-Tello H.; Wouters C.; Mesdaghi M.; Shahrooei M.; Bossuyt X.; Sag E.; Topaloglu R.; Ozen S.; Leavis H.L.; van Eijk M.M.J.; Bezrodnik L.; Blancas Galicia L.; Hovnanian A.; Nassif A.; Bader-Meunier B.; Neven B.; Meyts I.; Schrijvers R.; Puel A.; Bustamante J.; Aksentijevich I.; Kastner D.L.; Torres V.J.; Humblet-Baron S.; Liston A.; Abel L.; Boisson B.; Casanova J.L.;
Science 376:eabm6380-eabm6380(2022)
Cited for: INVOLVEMENT IN IMD107; VARIANTS IMD107 95-GLU--LEU-352 DEL; CYS-244; VAL-246; GLN-263 AND PRO-272; CHARACTERIZATION OF VARIANTS IMD107 95-GLU--LEU-352 DEL; CYS-244; VAL-246; GLN-263 AND PRO-272; MUTAGENESIS OF PRO-254; GLY-281 AND ASN-341; FUNCTION; CHARACTERIZATION OF VARIANT HIS-115;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.