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UniProtKB/Swiss-Prot Q96TA2: Variant p.Arg206Trp

ATP-dependent zinc metalloprotease YME1L1
Gene: YME1L1
Variant information

Variant position:  206
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Arginine (R) to Tryptophan (W) at position 206 (R206W, p.Arg206Trp).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from large size and basic (R) to large size and aromatic (W)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -3
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In OPA11; does not affect localization to mitochondria; abolishes processing to mature form by MPP; results in decreased mitochondrial protein catabolism; has very low protease activity; results in mitochondrial fragmentation.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  206
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  773
The length of the canonical sequence.

Location on the sequence:   SRALQSICSDLQYWPVFIQS  R GFKTLKSRTRRLQSTSERLA
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         SRALQSICSDLQYWPVFIQS-----RGFKT---LKSRTRRLQSTSERLA

Mouse                         PKTLRSICSDLQYFPVFIQS-----RGFKT---LKSRTRRL

Rat                           PKTLQSICSDLQNFPVFIQS-----RGFKT---LKSRTRRL

Drosophila                    VKVIPTITPGLLR-PLFSQQQLNQIRGFKTDRSIEAEQKRN

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 773 ATP-dependent zinc metalloprotease YME1L1
Topological domain 1 – 295 Mitochondrial matrix


Literature citations

Homozygous YME1L1 mutation causes mitochondriopathy with optic atrophy and mitochondrial network fragmentation.
Hartmann B.; Wai T.; Hu H.; MacVicar T.; Musante L.; Fischer-Zirnsak B.; Stenzel W.; Graef R.; van den Heuvel L.; Ropers H.H.; Wienker T.F.; Huebner C.; Langer T.; Kaindl A.M.;
Elife 5:0-0(2016)
Cited for: INVOLVEMENT IN OPA11; FUNCTION; CATALYTIC ACTIVITY; SUBCELLULAR LOCATION; SUBUNIT; POST-TRANSLATIONAL PROCESSING; INVOLVEMENT IN MITOCHONDRIAL DISORDER; VARIANT OPA11 TRP-206; CHARACTERIZATION OF VARIANT OPA11 TRP-206; MUTAGENESIS OF GLU-439;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.