Expasy logo

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P09871: Variant p.Cys294Arg

Complement C1s subcomponent
Gene: C1S
Feedback?
Variant information Variant position: help 294 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Cysteine (C) to Arginine (R) at position 294 (C294R, p.Cys294Arg). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and polar (C) to large size and basic (R) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In EDSPD2. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 294 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 688 The length of the canonical sequence.
Location on the sequence: help TDLTGQKKGWKLRYHGDPMP C PKEDTPNSVWEPAKAKYVFR The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         TDLTGQKKGWKLRYHGDPMPCPKEDTPNSVWEPAKAKYVFR

Rat                           TDLTGQNKGWKLRYHGDPIPCPKEISANSIWEPEKAKYVFK

Pig                           TDETEQKKGWKFRYHGDPIPCPKEVTANSFWEPEKAKYVFK

Bovine                        TDGSEQRKGWKFRYHGDPIPCPKEVTANSFWEPERAKYVFR
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 16 – 688 Complement C1s subcomponent
Chain 16 – 437 Complement C1s subcomponent heavy chain
Domain 292 – 356 Sushi 1
Binding site 275 – 275
Binding site 278 – 278
Binding site 279 – 279
Disulfide bond 294 – 341
Mutagenesis 275 – 275 D -> A. Does not affect association with the C1Q subcomplex.



Literature citations
Periodontal Ehlers-Danlos syndrome is caused by mutations in C1R and C1S, which encode subcomponents C1r and C1s of complement.
Kapferer-Seebacher I.; Pepin M.; Werner R.; Aitman T.J.; Nordgren A.; Stoiber H.; Thielens N.; Gaboriaud C.; Amberger A.; Schossig A.; Gruber R.; Giunta C.; Bamshad M.; Bjoerck E.; Chen C.; Chitayat D.; Dorschner M.; Schmitt-Egenolf M.; Hale C.J.; Hanna D.; Hennies H.C.; Heiss-Kisielewsky I.; Lindstrand A.; Lundberg P.; Mitchell A.L.; Nickerson D.A.; Reinstein E.; Rohrbach M.; Romani N.; Schmuth M.; Silver R.; Taylan F.; Vandersteen A.; Vandrovcova J.; Weerakkody R.; Yang M.; Pope F.M.; Byers P.H.; Zschocke J.;
Am. J. Hum. Genet. 99:1005-1014(2016)
Cited for: INVOLVEMENT IN EDSPD2; VARIANTS EDSPD2 ARG-294 AND VAL-316 DEL;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.