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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9GZZ9: Variant p.Met57Val

Ubiquitin-like modifier-activating enzyme 5
Gene: UBA5
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Variant information Variant position: help 57 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Methionine (M) to Valine (V) at position 57 (M57V, p.Met57Val). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Similar physico-chemical property. Both residues are medium size and hydrophobic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In DEE44; reduces UFM1 activating enzyme activity; reduces UFM1-DDRGK1 formation. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 57 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 404 The length of the canonical sequence.
Location on the sequence: help RVRIEKMSSEVVDSNPYSRL M ALKRMGIVSDYEKIRTFAVA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         RVRIEKMSSEVVDSNPYSRLMALKRMGIVSDYEKIRTFAVA

Mouse                         RTRIQEMSDEVLDSNPYSRLMALKRMGIVSDYKKIRTYAVA

Rat                           RTRIQKMSDEVVDSNPYSRLMALKRMGVVSDYEKIRTYAVA

Bovine                        RARIEKMSSEVVDSNPYSRLMALKRMGIVSDYEKIRTFTVA

Chicken                       RARIETMSPEVTDSNPYSRLMALKRMGIVKDYEKIRTFTVA

Xenopus laevis                RTKIEKMSAEVVDSNPYSRLMALKRMGIVENYEKIRTFTVA

Xenopus tropicalis            RAKINTMSAEVVDSNPYSRLMALKRMGIVEDYEKIRTFTVA

Zebrafish                     RPKIEQMSAEVVDSNPYSRLMALKRMGIVQDYEKIRSFAVA

Caenorhabditis elegans        RQKIEKLSAEVVDSNPYSRLMALQRMGIVNEYERIREKTVA

Drosophila                    RDRIDRMSAEVVDSNPYSRLMALQRMNIVKDYERIRYKAVA

Slime mold                    REKIEKMSSEVIDSNPYSRLMALKKMGIVNNYENIRNLSVI
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 404 Ubiquitin-like modifier-activating enzyme 5
Modified residue 45 – 45 Phosphoserine
Helix 54 – 61



Literature citations
Biallelic variants in UBA5 reveal that disruption of the UFM1 cascade can result in early-onset encephalopathy.
Colin E.; Daniel J.; Ziegler A.; Wakim J.; Scrivo A.; Haack T.B.; Khiati S.; Denomme A.S.; Amati-Bonneau P.; Charif M.; Procaccio V.; Reynier P.; Aleck K.A.; Botto L.D.; Herper C.L.; Kaiser C.S.; Nabbout R.; N'Guyen S.; Mora-Lorca J.A.; Assmann B.; Christ S.; Meitinger T.; Strom T.M.; Prokisch H.; Miranda-Vizuete A.; Hoffmann G.F.; Lenaers G.; Bomont P.; Liebau E.; Bonneau D.;
Am. J. Hum. Genet. 99:695-703(2016)
Cited for: VARIANTS DEE44 VAL-57; GLU-168; MET-260; THR-371 AND TYR-389; CHARACTERIZATION OF VARIANTS DEE44 VAL-57; GLU-168; MET-260; THR-371 AND TYR-389; FUNCTION; INVOLVEMENT IN DEE44;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.