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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q96CV9: Variant p.Val295Phe

Optineurin
Gene: OPTN
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Variant information Variant position: help 295 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Valine (V) to Phenylalanine (F) at position 295 (V295F, p.Val295Phe). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and hydrophobic (V) to large size and aromatic (F) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In ALS12; no effect on Golgi subcellular location; no effect on protein expression level; increased Golgi fragmentation; decreased Golgi ribbon formation; increased susceptibility to endoplasmic reticulum (ER) stress. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 295 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 577 The length of the canonical sequence.
Location on the sequence: help ETQTEGSTEKENDEEKGPET V GSEVEALNLQVTSLFKELQE The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         ETQTEGSTEKENDEEKGPETVGSEVEALNLQVTSLFKELQE

Rhesus macaque                ETQTEGSTEKENEEEKGPETVGSEVEALNLQVTSLFKELQE

Mouse                         EKQTARRADRE-KEDKGQESVGSEVETLSIQVTSLFKELQE

Rat                           ETQTEGSTQKE-EEDKDPESVGIEVETLNVQVASLFKELQE

Pig                           ETQTEEHKEQEKEEEKSPETVGSEVEMLNLQVTTLFKELQE

Chicken                       GTQTN-------QEEESSEAIGSEVESLKKQICALFKELQE

Xenopus laevis                GVQTE----QESEQSQSEVIISSEVDILKEKVKSLNKELQE

Zebrafish                     SAQTS-------LPSAAETNASTEVKNLEDQLLKLCNELKQ
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 577 Optineurin
Region 261 – 297 Disordered
Coiled coil 239 – 508
Compositional bias 261 – 295 Basic and acidic residues



Literature citations
A novel amyotrophic lateral sclerosis mutation in OPTN induces ER stress and Golgi fragmentation in vitro.
Fifita J.A.; Williams K.L.; Sundaramoorthy V.; Mccann E.P.; Nicholson G.A.; Atkin J.D.; Blair I.P.;
Amyotroph. Lateral Scler. Frontotemporal Degener. 18:126-133(2017)
Cited for: VARIANT ALS12 PHE-295; CHARACTERIZATION OF VARIANT ALS12 PHE-295; FUNCTION; SUBCELLULAR LOCATION;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.