UniProtKB/SwissProt variant VAR

Variant information

Variant position:

619

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

LB/B

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Proline (P) to Leucine (L) at position 619 (P619L, p.Pro619Leu).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Similar physico-chemical property. Both residues are medium size and hydrophobic.

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-3

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

No effect on transactivation activity.

Any additional useful information about the variant.

Other resources:

Links to websites of interest for the variant.

Variant rs146227301 [ dbSNP | Ensembl ]

Sequence information

Variant position:

619

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

691

The length of the canonical sequence.

Location on the sequence:

PCLPELPFPGPFCPQALGHP P GGDGYFPDLFPTPCPQALGR

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         PCLPELPFPGPFCPQALGHPPGGDGYFPDLFPTPCPQALGR

Mouse                         HCLPEPPFPRPHYPQALGQPLGAEGYFPNLLPTPYALTMSK

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 691	Homeobox protein NOBOX

Literature citations

New NOBOX mutations identified in a large cohort of women with primary ovarian insufficiency decrease KIT-L expression.
Bouilly J.; Roucher-Boulez F.; Gompel A.; Bry-Gauillard H.; Azibi K.; Beldjord C.; Dode C.; Bouligand J.; Mantel A.G.; Hecart A.C.; Delemer B.; Young J.; Binart N.;
J. Clin. Endocrinol. Metab. 100:994-1001(2015)
Cited for: VARIANTS POF5 TRP-91; ARG-111; TRP-117 AND THR-371; CHARACTERIZATION OF VARIANTS POF5 TRP-91; ARG-111; TRP-117 AND THR-371; FUNCTION; DNA-BINDING; VARIANTS LEU-44 AND LEU-619; CHARACTERIZATION OF VARIANTS LEU-44 AND LEU-619;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot O60393: Variant p.Pro619Leu