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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q92736: Variant p.Ser4124Thr

Ryanodine receptor 2
Gene: RYR2
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Variant information Variant position: help 4124 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Serine (S) to Threonine (T) at position 4124 (S4124T, p.Ser4124Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from small size and polar (S) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In CPVT1; changed ryanodine-sensitive calcium-release channel activity; increased sensitivity to cytosolic calcium activation. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 4124 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 4967 The length of the canonical sequence.
Location on the sequence: help NLSEHMPNDTRLQTFLELAE S VLNYFQPFLGRIEIMGSAKR The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         NLSEHMPNDTRLQTFLELAESVLNYFQPFLGRIEIMGSAKR

Mouse                         NLSEHMPNDTRLQTFLELAESVLNYFQPFLGRIEIMGSAKR

Rat                           NLSEHMPNDTRLQTFLELAESVLNYFQPFLGRIEIMGSAKR

Rabbit                        NLSEHMPNDTRLQTFLELAESVLNYFQPFLGRIEIMGSAKR
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 4967 Ryanodine receptor 2
Topological domain 1 – 4281 Cytoplasmic
Mutagenesis 4108 – 4108 H -> N. Changed ryanodine-sensitive calcium-release channel activity characterized by increased sensitivity to cytosolic calcium activation.
Mutagenesis 4108 – 4108 H -> Q. Changed ryanodine-sensitive calcium-release channel activity characterized by increased sensitivity to cytosolic calcium activation.
Mutagenesis 4112 – 4112 D -> N. Decreased function in release of sequestered calcium ion into cytosol by sarcoplasmic reticulum. Changed ryanodine-sensitive calcium-release channel activity. Mutant channels are less respositive to activation by caffeine and store calcium overload. Affects channel sensitivity to cytosolic and luminal calcium activation.



Literature citations
Spectrum and prevalence of cardiac ryanodine receptor (RyR2) mutations in a cohort of unrelated patients referred explicitly for long QT syndrome genetic testing.
Tester D.J.; Kopplin L.J.; Will M.L.; Ackerman M.J.;
Heart Rhythm 2:1099-1105(2005)
Cited for: VARIANTS CPVT1 GLN-176; LEU-414; PHE-419; ALA-466; THR-2403; PHE-3800; THR-4124; CYS-4499; THR-4510; THR-4556; VAL-4848 AND GLN-4959; Enhanced cytosolic Ca2+ activation underlies a common defect of central domain cardiac ryanodine receptor mutations linked to arrhythmias.
Xiao Z.; Guo W.; Sun B.; Hunt D.J.; Wei J.; Liu Y.; Wang Y.; Wang R.; Jones P.P.; Back T.G.; Chen S.R.;
J. Biol. Chem. 291:24528-24537(2016)
Cited for: CHARACTERIZATION OF VARIANTS CVPT1 SER-3946; THR-4124; PRO-4158 AND PRO-4159; MUTAGENESIS OF GLY-3946; MET-3978 AND HIS-4108; FUNCTION; TRANSPORTER ACTIVITY;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.