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UniProtKB/Swiss-Prot Q7Z3E5: Variant p.Arg343Cys

LisH domain-containing protein ARMC9
Gene: ARMC9
Variant information

Variant position:  343
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  Unclassified
The variants are classified into three categories: Disease, Polymorphism and Unclassified.
  • Disease: Variants implicated in disease according to literature reports.
  • Polymorphism: Variants not reported to be implicated in disease.
  • Unclassified: Variants with uncertain implication in disease according to literature reports. Evidence against or in favor of a pathogenic role is limited and/or conflicting.

Residue change:  From Arginine (R) to Cysteine (C) at position 343 (R343C, p.Arg343Cys).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from large size and basic (R) to medium size and polar (C)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -3
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Involvement in disease:  Joubert syndrome 30 (JBTS30) [MIM:617622]: A form of Joubert syndrome, a disorder presenting with cerebellar ataxia, oculomotor apraxia, hypotonia, neonatal breathing abnormalities and psychomotor delay. Neuroradiologically, it is characterized by cerebellar vermian hypoplasia/aplasia, thickened and reoriented superior cerebellar peduncles, and an abnormally large interpeduncular fossa, giving the appearance of a molar tooth on transaxial slices (molar tooth sign). Additional variable features include retinal dystrophy, renal disease, liver fibrosis, and polydactyly. JBTS30 inheritance is autosomal recessive. {ECO:0000269|PubMed:28625504}. Note=The disease is caused by mutations affecting the gene represented in this entry.
The name and a short description of the disease associated with the variant. For more information about the disease, the user can refer to OMIM, following the link provided after the disease acronym.

Variant description:  In JBTS30; unknown pathological significance.
Any additional useful information about the variant.

Other resources:  
Links to websites of interest for the variant.



Sequence information

Variant position:  343
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  818
The length of the canonical sequence.

Location on the sequence:   KDLILGSDRLKAFLLQALRW  R LTTSHPGEQRETVLQAYISN
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         KDLILGSDRLKAFLLQALRWRLTTSHPGEQRETVLQAYISN

Mouse                         KDLIWGSDRLKAFLLQALRWRLTTSHPGEQRETVLQAYISN

Rat                           KDLIWGSDRLKAFLLQALRWRLTTSHPGEQRETVLQAYISN

Bovine                        KDLILGSDRLKAFLLQALRWRLTTSHPGEQRETVLQAYISN

Xenopus laevis                KDLVFGNDRLKAFILQALRWRLTRSQPGEQRNTVLQAYISN

Xenopus tropicalis            KDLVFGNDRLKALILQALRWRLTRSQPGEQRNTVLQAYISN

Zebrafish                     KDLLTGSDRLKALLLQALRWRLTRSLHGEQRDTVLQAFISN

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 818 LisH domain-containing protein ARMC9


Literature citations

Mutations in ARMC9, which encodes a basal body protein, cause Joubert syndrome in humans and ciliopathy phenotypes in zebrafish.
Van De Weghe J.C.; Rusterholz T.D.S.; Latour B.; Grout M.E.; Aldinger K.A.; Shaheen R.; Dempsey J.C.; Maddirevula S.; Cheng Y.H.; Phelps I.G.; Gesemann M.; Goel H.; Birk O.S.; Alanzi T.; Rawashdeh R.; Khan A.O.; Bamshad M.J.; Nickerson D.A.; Neuhauss S.C.F.; Dobyns W.B.; Alkuraya F.S.; Roepman R.; Bachmann-Gagescu R.; Doherty D.;
Am. J. Hum. Genet. 101:23-36(2017)
Cited for: SUBCELLULAR LOCATION; INDUCTION; INVOLVEMENT IN JBTS30; VARIANTS JBTS30 ARG-69; ARG-87 DEL; CYS-343; CYS-446; ARG-492 AND LEU-520;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.