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UniProtKB/Swiss-Prot Q9UBR1: Variant p.Ser264Arg

Beta-ureidopropionase
Gene: UPB1
Variant information

Variant position:  264
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Serine (S) to Arginine (R) at position 264 (S264R, p.Ser264Arg).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from small size and polar (S) to large size and basic (R)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  -1
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In UPB1D; complete loss of activity.
Any additional useful information about the variant.



Sequence information

Variant position:  264
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  384
The length of the canonical sequence.

Location on the sequence:   MYSINGAEIIFNPSATIGAL  S ESLWPIEARNAAIANHCFTC
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         MYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFTC

Mouse                         MYSINGAEIIFNPSATIGELSESLWPIEARNAAIANHCFTC

Rat                           MYSVNGAEIIFNPSATIGELSESMWPIEARNAAIANHCFTC

Slime mold                    AYGLNGAEIVFNPSATVGELSEPMWGVEARNAAMTNNYFVG

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 384 Beta-ureidopropionase
Domain 72 – 344 CN hydrolase
Helix 262 – 279


Literature citations

Beta-ureidopropionase deficiency: phenotype, genotype and protein structural consequences in 16 patients.
van Kuilenburg A.B.; Dobritzsch D.; Meijer J.; Krumpel M.; Selim L.A.; Rashed M.S.; Assmann B.; Meinsma R.; Lohkamp B.; Ito T.; Abeling N.G.; Saito K.; Eto K.; Smitka M.; Engvall M.; Zhang C.; Xu W.; Zoetekouw L.; Hennekam R.C.;
Biochim. Biophys. Acta 1822:1096-1108(2012)
Cited for: VARIANTS UPB1D SER-13; ARG-235; TRP-236; ARG-264; GLN-326 AND MET-359; CHARACTERIZATION OF VARIANTS UPB1D SER-13; ARG-235; ARG-264; GLN-326; TRP-326 AND MET-359; FUNCTION; CATALYTIC ACTIVITY; PATHWAY; SUBUNIT; TISSUE SPECIFICITY;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.