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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P21579: Variant p.Asp304Gly

Synaptotagmin-1
Gene: SYT1
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Variant information Variant position: help 304 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Aspartate (D) to Glycine (G) at position 304 (D304G, p.Asp304Gly). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and acidic (D) to glycine (G) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In BAGOS. Any additional useful information about the variant.


Sequence information Variant position: help 304 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 422 The length of the canonical sequence.
Location on the sequence: help VPTAGKLTVVILEAKNLKKM D VGGLSDPYVKIHLMQNGKRL The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         VPTA---GKLTVV-------------------------------ILEAKNLKKMD-------------VGGLSDPYVKIH-------------LMQNGKRL

Mouse                         VPTA---GKLTVV----------------------------

Rat                           VPTA---GKLTVV----------------------------

Bovine                        VPTA---GKLTVV----------------------------

Chicken                       VPTA---GKLTVV----------------------------

Caenorhabditis elegans        VPTA---GKLTVV----------------------------

Baker's yeast                 NPSSSSSGNATLVQDDINVYSHIINDTLNEVNLFPEVSKYW
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 422 Synaptotagmin-1
Topological domain 81 – 422 Cytoplasmic
Domain 273 – 406 C2 2
Region 136 – 382 Phospholipid binding
Binding site 304 – 304
Binding site 304 – 304
Binding site 310 – 310
Beta strand 304 – 307



Literature citations
SYT1-associated neurodevelopmental disorder: a case series.
Baker K.; Gordon S.L.; Melland H.; Bumbak F.; Scott D.J.; Jiang T.J.; Owen D.; Turner B.J.; Boyd S.G.; Rossi M.; Al-Raqad M.; Elpeleg O.; Peck D.; Mancini G.M.S.; Wilke M.; Zollino M.; Marangi G.; Weigand H.; Borggraefe I.; Haack T.; Stark Z.; Sadedin S.; Tan T.Y.; Jiang Y.; Gibbs R.A.; Ellingwood S.; Amaral M.; Kelley W.; Kurian M.A.; Cousin M.A.; Raymond F.L.;
Brain 141:2576-2591(2018)
Cited for: INVOLVEMENT IN BAGOS; VARIANTS BAGOS LYS-303; GLY-304; GLU-366; THR-368 AND LYS-371; CHARACTERIZATION OF VARIANTS BAGOS LYS-303; GLY-304; GLU-366; THR-368 AND LYS-371;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.