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UniProtKB/Swiss-Prot Q15878: Variant p.Ile1422Phe

Voltage-dependent R-type calcium channel subunit alpha-1E
Gene: CACNA1E
Variant information

Variant position:  1422
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:  LP/P [Disclaimer]
The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change:  From Isoleucine (I) to Phenylalanine (F) at position 1422 (I1422F, p.Ile1422Phe).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:  Change from medium size and hydrophobic (I) to large size and aromatic (F)
The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:  0
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description:  In DEE69.
Any additional useful information about the variant.



Sequence information

Variant position:  1422
The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:  2313
The length of the canonical sequence.

Location on the sequence:   FYVVYFVVFPFFFVNIFVAL  I IITFQEQGDKMMEECSLEKN
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation: 
The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         FYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEECSLEKN

Mouse                         FYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEECSLEKN

Rat                           FYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEECSLEKN

Rabbit                        FYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEECSLEKN

Sequence annotation in neighborhood:  
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.

TypePositionsDescription
Chain 1 – 2313 Voltage-dependent R-type calcium channel subunit alpha-1E
Transmembrane 1399 – 1422 Helical; Name=S6 of repeat III
Repeat 1140 – 1426 III


Literature citations

De novo pathogenic variants in CACNA1E cause developmental and epileptic encephalopathy with contractures, macrocephaly, and dyskinesias.
Helbig K.L.; Lauerer R.J.; Bahr J.C.; Souza I.A.; Myers C.T.; Uysal B.; Schwarz N.; Gandini M.A.; Huang S.; Keren B.; Mignot C.; Afenjar A.; Billette de Villemeur T.; Heron D.; Nava C.; Valence S.; Buratti J.; Fagerberg C.R.; Soerensen K.P.; Kibaek M.; Kamsteeg E.J.; Koolen D.A.; Gunning B.; Schelhaas H.J.; Kruer M.C.; Fox J.; Bakhtiari S.; Jarrar R.; Padilla-Lopez S.; Lindstrom K.; Jin S.C.; Zeng X.; Bilguvar K.; Papavasileiou A.; Xing Q.; Zhu C.; Boysen K.; Vairo F.; Lanpher B.C.; Klee E.W.; Tillema J.M.; Payne E.T.; Cousin M.A.; Kruisselbrink T.M.; Wick M.J.; Baker J.; Haan E.; Smith N.; Sadeghpour A.; Davis E.E.; Katsanis N.; Corbett M.A.; MacLennan A.H.; Gecz J.; Biskup S.; Goldmann E.; Rodan L.H.; Kichula E.; Segal E.; Jackson K.E.; Asamoah A.; Dimmock D.; McCarrier J.; Botto L.D.; Filloux F.; Tvrdik T.; Cascino G.D.; Klingerman S.; Neumann C.; Wang R.; Jacobsen J.C.; Nolan M.A.; Snell R.G.; Lehnert K.; Sadleir L.G.; Anderlid B.M.; Kvarnung M.; Guerrini R.; Friez M.J.; Lyons M.J.; Leonhard J.; Kringlen G.; Casas K.; El Achkar C.M.; Smith L.A.; Rotenberg A.; Poduri A.; Sanchis-Juan A.; Carss K.J.; Rankin J.; Zeman A.; Raymond F.L.; Blyth M.; Kerr B.; Ruiz K.; Urquhart J.; Hughes I.; Banka S.; Hedrich U.B.S.; Scheffer I.E.; Helbig I.; Zamponi G.W.; Lerche H.; Mefford H.C.;
Am. J. Hum. Genet. 103:666-678(2018)
Cited for: FUNCTION; INVOLVEMENT IN DEE69; VARIANTS DEE69 PRO-228; ARG-348; ARG-352; LEU-603; ASP-690; SER-698; THR-700; VAL-701; PRO-702; THR-702; 829-ARG--CYS-2313 DEL; 1389-ARG--CYS-2313 DEL; PHE-1422; ASN-1425; ARG-1430 AND GLY-1720; CHARACTERIZATION OF VARIANTS DEE69 LEU-603; SER-698; VAL-701 AND THR-702;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.