UniProtKB/SwissProt variant VAR

Variant information

Variant position:

569

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Type of variant:

US

The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Valine (V) to Glutamate (E) at position 569 (V569E, p.Val569Glu).

Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.

Physico-chemical properties:

Change from medium size and hydrophobic (V) to medium size and acidic (E)

The physico-chemical property of the reference and variant residues and the change implicated.

BLOSUM score:

-2

The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page

Variant description:

In SPGF35; unknown pathological significance.

Any additional useful information about the variant.

Sequence information

Variant position:

569

The position of the amino-acid change on the UniProtKB canonical protein sequence.

Protein sequence length:

1663

The length of the canonical sequence.

Location on the sequence:

ADQSDLAQPGAVQHGLVQPG V DQRGLAQPRADHQRGLVPPG

The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.

Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         ADQSDLAQPGAVQHGLVQPGVDQRGLAQPRADHQRGLVPPG

Mouse                         -----------------------------------------

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 1663	Glutamine-rich protein 2
Compositional bias	381 – 759	Gln-rich
Alternative sequence	1 – 1156	Missing. In isoform 3.

Literature citations

Loss-of-function mutations in QRICH2 cause male infertility with multiple morphological abnormalities of the sperm flagella.
Shen Y.; Zhang F.; Li F.; Jiang X.; Yang Y.; Li X.; Li W.; Wang X.; Cheng J.; Liu M.; Zhang X.; Yuan G.; Pei X.; Cai K.; Hu F.; Sun J.; Yan L.; Tang L.; Jiang C.; Tu W.; Xu J.; Wu H.; Kong W.; Li S.; Wang K.; Sheng K.; Zhao X.; Yue H.; Yang X.; Xu W.;
Nat. Commun. 10:433-433(2019)
Cited for: FUNCTION; TISSUE SPECIFICITY; SUBCELLULAR LOCATION; INTERACTION WITH AKAP3; ODF2 AND TSSK4; INVOLVEMENT IN SPGF35; VARIANTS SPGF35 64-TRP--ARG-1663 DEL; GLU-569; 1013-ARG--ARG-1663 DEL; LYS-1105; GLU-1112; 1127-LEU--ARG-1663 DEL; VAL-1347 AND HIS-1494; CHARACTERIZATION OF VARIANTS SPGF35 64-TRP--ARG-1663 DEL AND 1013-ARG--ARG-1663 DEL;

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9H0J4: Variant p.Val569Glu