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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q96HA7: Variant p.Ser1197Pro

Tonsoku-like protein
Gene: TONSL
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Variant information Variant position: help 1197 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Serine (S) to Proline (P) at position 1197 (S1197P, p.Ser1197Pro). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from small size and polar (S) to medium size and hydrophobic (P) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In SEMDSP. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 1197 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 1378 The length of the canonical sequence.
Location on the sequence: help HQTALGSAFQDAEHLKTLSL S YNALGAPALARTLQSLPAGT The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         HQTALGSAFQDAEHLKTLSLSYNALGAPALARTLQSLPAGT

Mouse                         HQAALGGAFQDAVHLKTLSLSYNLLGAPALARVLQTLPACT

Rat                           HQAALGSAFKDAEHLKTLSLSYNTLGAPALARVLQSLPTCT

Bovine                        HQVALGSAFQDTKCLKTLSLSYNGLGPTALGPVLGSLPAHS

Zebrafish                     HRLLLANAMASTGNMRSVCLSHNALGSTGFELVLKTLPMHC

Drosophila                    FDLGF-------NKLTRFDISFNQLTQQSVRRLTDQLNSCR
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 1378 Tonsoku-like protein
Repeat 1188 – 1212 LRR 4



Literature citations
Bi-allelic variants in TONSL cause sponastrime dysplasia and a spectrum of skeletal dysplasia phenotypes.
Burrage L.C.; Reynolds J.J.; Baratang N.V.; Phillips J.B.; Wegner J.; McFarquhar A.; Higgs M.R.; Christiansen A.E.; Lanza D.G.; Seavitt J.R.; Jain M.; Li X.; Parry D.A.; Raman V.; Chitayat D.; Chinn I.K.; Bertuch A.A.; Karaviti L.; Schlesinger A.E.; Earl D.; Bamshad M.; Savarirayan R.; Doddapaneni H.; Muzny D.; Jhangiani S.N.; Eng C.M.; Gibbs R.A.; Bi W.; Emrick L.; Rosenfeld J.A.; Postlethwait J.; Westerfield M.; Dickinson M.E.; Beaudet A.L.; Ranza E.; Huber C.; Cormier-Daire V.; Shen W.; Mao R.; Heaney J.D.; Orange J.S.; Bertola D.; Yamamoto G.L.; Baratela W.A.R.; Butler M.G.; Ali A.; Adeli M.; Cohn D.H.; Krakow D.; Jackson A.P.; Lees M.; Offiah A.C.; Carlston C.M.; Carey J.C.; Stewart G.S.; Bacino C.A.; Campeau P.M.; Lee B.;
Am. J. Hum. Genet. 104:422-438(2019)
Cited for: VARIANTS SEMDSP 110-TRP--LEU-1378 DEL; 154-GLN--LEU-1378 DEL; LYS-199; LYS-487; LYS-494; LEU-613; MET-653; 713-GLN--LEU-1378 DEL; 803-GLN--LEU-1378 DEL; TRP-934 AND PRO-1197; INVOLVEMENT IN SEMDSP;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.