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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P07333: Variant p.His643Gln

Macrophage colony-stimulating factor 1 receptor
Gene: CSF1R
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Variant information Variant position: help 643 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Histidine (H) to Glutamine (Q) at position 643 (H643Q, p.His643Gln). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Similar physico-chemical property. Both residues are medium size and polar. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In BANDDOS. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 643 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 972 The length of the canonical sequence.
Location on the sequence: help HADEKEALMSELKIMSHLGQ H ENIVNLLGACTHGGPVLVIT The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         HADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVIT

Mouse                         HADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVIT

Rat                           HADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVIT

Cat                           HADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVIT

Zebrafish                     HPDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVIT
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 20 – 972 Macrophage colony-stimulating factor 1 receptor
Topological domain 539 – 972 Cytoplasmic
Domain 582 – 910 Protein kinase
Alternative sequence 307 – 972 Missing. In isoform 2.



Literature citations
Homozygous Mutations in CSF1R Cause a Pediatric-Onset Leukoencephalopathy and Can Result in Congenital Absence of Microglia.
Oosterhof N.; Chang I.J.; Karimiani E.G.; Kuil L.E.; Jensen D.M.; Daza R.; Young E.; Astle L.; van der Linde H.C.; Shivaram G.M.; Demmers J.; Latimer C.S.; Keene C.D.; Loter E.; Maroofian R.; van Ham T.J.; Hevner R.F.; Bennett J.T.;
Am. J. Hum. Genet. 104:936-947(2019)
Cited for: VARIANT BANDDOS GLN-643; FUNCTION;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.