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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9UGI6: Variant p.Ser436Cys

Small conductance calcium-activated potassium channel protein 3
Gene: KCNN3
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Variant information Variant position: help 436 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance

Residue change: help From Serine (S) to Cysteine (C) at position 436 (S436C, p.Ser436Cys). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from small size and polar (S) to medium size and polar (C) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page

Variant description: help In ZLS3; gain-of-function variant leading to increased channel sensitivity to calcium and faster channel activation; does not affect interaction with CALM1. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 436 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 731 The length of the canonical sequence.
Location on the sequence: help YLIARVMLLHSKLFTDASSR S IGALNKINFNTRFVMKTLMT The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 731 Small conductance calcium-activated potassium channel protein 3



Literature citations
Gain-of-function mutations in KCNN3 encoding the small-conductance Ca2+-activated K+ channel SK3 cause Zimmermann-Laband syndrome.
Bauer C.K.; Schneeberger P.E.; Kortuem F.; Altmueller J.; Santos-Simarro F.; Baker L.; Keller-Ramey J.; White S.M.; Campeau P.M.; Gripp K.W.; Kutsche K.;
Am. J. Hum. Genet. 104:1139-1157(2019)
Cited for: FUNCTION; ACTIVITY REGULATION; INTERACTION WITH CALM1; INVOLVEMENT IN ZLS3; VARIANTS ZLS3 GLU-269; ASP-350 AND CYS-436; CHARACTERIZATION OF VARIANTS ZLS3 GLU-269; ASP-350 AND CYS-436; CHARACTERIZATION OF VARIANT LEU-450;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.