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UniProtKB/Swiss-Prot Q9Y320: Variant p.Asp55Ala

Thioredoxin-related transmembrane protein 2
Gene: TMX2
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Variant information Variant position:

55 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

US The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Aspartate (D) to Alanine (A) at position 55 (D55A, p.Asp55Ala). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and acidic (D) to small size and hydrophobic (A) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description:

In NEDMCMS; uncertain significance. Any additional useful information about the variant.
Other resources:

Links to websites of interest for the variant.

Variant rs1398376742 [ dbSNP | Ensembl ]

Sequence information Variant position:

55 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

296 The length of the canonical sequence.
Location on the sequence:

AFLLVRKLPPLCHGLPTQRE D GNPCDFDWREVEILMFLSAI The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	49 – 296	Thioredoxin-related transmembrane protein 2
Topological domain	49 – 102	Extracellular

Literature citations
TMX2 is a crucial regulator of cellular redox state, and its dysfunction causes severe brain developmental abnormalities.
Vandervore L.V.; Schot R.; Milanese C.; Smits D.J.; Kasteleijn E.; Fry A.E.; Pilz D.T.; Brock S.; Boerklue-Yuecel E.; Post M.; Bahi-Buisson N.; Sanchez-Soler M.J.; van Slegtenhorst M.; Keren B.; Afenjar A.; Coury S.A.; Tan W.H.; Oegema R.; de Vries L.S.; Fawcett K.A.; Nikkels P.G.J.; Bertoli-Avella A.; Al Hashem A.; Alwabel A.A.; Tlili-Graiess K.; Efthymiou S.; Zafar F.; Rana N.; Bibi F.; Houlden H.; Maroofian R.; Person R.E.; Crunk A.; Savatt J.M.; Turner L.; Doosti M.; Karimiani E.G.; Saadi N.W.; Akhondian J.; Lequin M.H.; Kayserili H.; van der Spek P.J.; Jansen A.C.; Kros J.M.; Verdijk R.M.; Milosevic N.J.; Fornerod M.; Mastroberardino P.G.; Mancini G.M.S.;
Am. J. Hum. Genet. 105:1126-1147(2019)
Cited for: INVOLVEMENT IN NEDMCMS; VARIANTS NEDMCMS CYS-53; ALA-55; ARG-56; HIS-62; GLY-109; VAL-117; THR-178; GLN-205; TRP-231 AND 253-ARG--LYS-296 DEL; CHARACTERIZATION OF VARIANTS NEDMCMS CYS-53; ALA-55; GLN-205; TRP-231 AND 253-ARG--LYS-296 DEL; FUNCTION; SUBUNIT; SUBCELLULAR LOCATION; INTERACTION WITH CANX AND ATP2A2; MUTAGENESIS OF CYS-170;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.