Variant position: 1275 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: 1443 The length of the canonical sequence.
Location on the sequence:
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human VYSVDFMVDNAQLGFLVSDR DRNLMVYMYLPEAKESFGGMR
Mouse VYSVDFMVDNAQLGFLVSDR DRNLMVYMYLPEAKESFGGMR
Bovine VYSVDFMVDNAQLGFLVSDR DRNLMVYMYLPEAKESFGGMR
Zebrafish VYSIEFMVDNNQLGFLVSDR DKNLMVYMYLPEAKESFGGMR
Caenorhabditis elegans PMASQLVVDGAHVGFLLSDE TGNITMFNYAPEAPESNGGER
Drosophila VYGIEFMVDNSNLGFLVTDA ERNIIVYMYQPEARESLGGQK
Sequence annotation in neighborhood: The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
1 – 1443 Cleavage and polyadenylation specificity factor subunit 1
CPSF1 mutations are associated with early-onset high myopia and involved in retinal ganglion cell axon projection.
Ouyang J.; Sun W.; Xiao X.; Li S.; Jia X.; Zhou L.; Wang P.; Zhang Q.;
Hum. Mol. Genet. 28:1959-1970(2019)
Cited for: VARIANTS MYP27 5-TYR--PHE-1443 DEL; 620-GLN--PHE-1443 DEL AND TYR-1275; INVOLVEMENT IN MYP27; TISSUE SPECIFICITY;
Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.