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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot P55011: Variant p.Glu979Lys

Solute carrier family 12 member 2
Gene: SLC12A2
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Variant information Variant position: help 979 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Glutamate (E) to Lysine (K) at position 979 (E979K, p.Glu979Lys). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and acidic (E) to large size and basic (K) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In DFNA78. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 979 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 1212 The length of the canonical sequence.
Location on the sequence: help KSDLDTSKPLSEKPITHKVE E EDGKTATQPLLKKESKGPIV The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         KSDLDTSKPLSE------KPITHKVEEEDGKTATQPLLKKESKGPIV

Mouse                         KSDQDTCKSSGE------KSITQKDEEEDGKTPTQPLLKKE

Zebrafish                     DSDGDSSKPSSKATSVQNSPAVQKDEDDDGKAHTQPLLKKD
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 1212 Solute carrier family 12 member 2
Topological domain 746 – 1212 Cytoplasmic
Region 962 – 989 Disordered
Modified residue 994 – 994 Phosphoserine
Alternative sequence 976 – 991 Missing. In isoform 2.



Literature citations
SLC12A2 variants cause a neurodevelopmental disorder or cochleovestibular defect.
McNeill A.; Iovino E.; Mansard L.; Vache C.; Baux D.; Bedoukian E.; Cox H.; Dean J.; Goudie D.; Kumar A.; Newbury-Ecob R.; Fallerini C.; Renieri A.; Lopergolo D.; Mari F.; Blanchet C.; Willems M.; Roux A.F.; Pippucci T.; Delpire E.;
Brain 143:2380-2387(2020)
Cited for: INVOLVEMENT IN DFNA78; INVOLVEMENT IN DELMNES; VARIANTS DELMNES VAL-327; ILE-376; LEU-379; GLN-410; 892-TRP--SER-1212 DEL AND LYS-980; VARIANT DFNA78 LYS-979; Variants encoding a restricted carboxy-terminal domain of SLC12A2 cause hereditary hearing loss in humans.
Mutai H.; Wasano K.; Momozawa Y.; Kamatani Y.; Miya F.; Masuda S.; Morimoto N.; Nara K.; Takahashi S.; Tsunoda T.; Homma K.; Kubo M.; Matsunaga T.;
PLoS Genet. 16:e1008643-e1008643(2020)
Cited for: INVOLVEMENT IN DFNA78; FUNCTION; VARIANTS DFNA78 LYS-979; TYR-981 AND THR-988; CHARACTERIZATION OF VARIANTS DFNA78 TYR-981 AND THR-988;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.