UniProtKB/Swiss-Prot Q96IR7: Variant p.Leu217Pro

4-hydroxyphenylpyruvate dioxygenase-like protein
Gene: HPDL
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Variant information Variant position:

217 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

US The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Leucine (L) to Proline (P) at position 217 (L217P, p.Leu217Pro). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Similar physico-chemical property. Both residues are medium size and hydrophobic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description:

In NEDSWMA; uncertain significance. Any additional useful information about the variant.
Other resources:

Links to websites of interest for the variant.

Variant rs1297494568 [ dbSNP | Ensembl ]

Sequence information Variant position:

217 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

371 The length of the canonical sequence.
Location on the sequence:

PELGLEMTAGFGLGGLRLTA L QAQPGSIVPTLVLAESLPGA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         PELGLEMTAGFGLG---------------GLRLTALQAQPGSI----VPTL--VLAESLPGA

Mouse                         PEMGLKVAAGSGRG---------------GLRLTALQTPPN

Rat                           PELGLKVAVGSGRG---------------GLRLTALQTLPN

Slime mold                    ENFENELILDKNFYVITKSDFKYTKKENIGLKMAVLSNQPL

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 371	4-hydroxyphenylpyruvate dioxygenase-like protein
Domain	160 – 328	VOC 2

Literature citations
Bi-allelic HPDL Variants Cause a Neurodegenerative Disease Ranging from Neonatal Encephalopathy to Adolescent-Onset Spastic Paraplegia.
Husain R.A.; Grimmel M.; Wagner M.; Hennings J.C.; Marx C.; Feichtinger R.G.; Saadi A.; Rostasy K.; Radelfahr F.; Bevot A.; Doebler-Neumann M.; Hartmann H.; Colleaux L.; Cordts I.; Kobeleva X.; Darvish H.; Bakhtiari S.; Kruer M.C.; Besse A.; Ng A.C.; Chiang D.; Bolduc F.; Tafakhori A.; Mane S.; Ghasemi Firouzabadi S.; Huebner A.K.; Buchert R.; Beck-Woedl S.; Mueller A.J.; Laugwitz L.; Naegele T.; Wang Z.Q.; Strom T.M.; Sturm M.; Meitinger T.; Klockgether T.; Riess O.; Klopstock T.; Brandl U.; Huebner C.A.; Deschauer M.; Mayr J.A.; Bonnen P.E.; Kraegeloh-Mann I.; Wortmann S.B.; Haack T.B.;
Am. J. Hum. Genet. 107:364-373(2020)
Cited for: INVOLVEMENT IN SPG83; INVOLVEMENT IN NEDSWMA; VARIANTS SPG83 ASP-50 AND HIS-287; VARIANTS NEDSWMA ARG-157; TYR-168; CYS-179; PRO-217; PRO-234; 241-GLN--ALA-371 DEL; PRO-248; GLN-251; GLU-260; THR-266 AND 342-GLN--ALA-371 DEL; CHARACTERIZATION OF VARIANTS NEDSWMA ARG-157; TYR-168; CYS-179 AND 342-GLN--ALA-371 DEL; SUBCELLULAR LOCATION;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.