UniProtKB/Swiss-Prot Q7Z2D5: Variant p.Arg345Thr

Phospholipid phosphatase-related protein type 4
Gene: PLPPR4
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Variant information Variant position:

345 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Arginine (R) to Threonine (T) at position 345 (R345T, p.Arg345Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from large size and basic (R) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Other resources:

Links to websites of interest for the variant.

Variant rs138327459 [ dbSNP | Ensembl ]

Sequence information Variant position:

345 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

763 The length of the canonical sequence.
Location on the sequence:

YAVGNFLPSDESMFQHRDAL R SLTDLNQDPNRLLSAKNGSS The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         YAVGNFLPSDESMFQHRDALRSLTDLNQDPNRLLSAKNGSS

Mouse                         YAVGNFLPSEDSMLQHRDALRSLTDLNQDPSRVLSAKNGSS

Rat                           YAVGNFLPSEDSMLQHRDALRSLTDLNQDPSRVLSAKNGSS

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 763	Phospholipid phosphatase-related protein type 4
Modified residue	346 – 346	Phosphoserine
Glycosylation	362 – 362	N-linked (GlcNAc...) asparagine

Literature citations
Molecular cause and functional impact of altered synaptic lipid signaling due to a prg-1 gene SNP.
Vogt J.; Yang J.W.; Mobascher A.; Cheng J.; Li Y.; Liu X.; Baumgart J.; Thalman C.; Kirischuk S.; Unichenko P.; Horta G.; Radyushkin K.; Stroh A.; Richers S.; Sahragard N.; Distler U.; Tenzer S.; Qiao L.; Lieb K.; Tuescher O.; Binder H.; Ferreiros N.; Tegeder I.; Morris A.J.; Gropa S.; Nuernberg P.; Toliat M.R.; Winterer G.; Luhmann H.J.; Huai J.; Nitsch R.;
EMBO Mol. Med. 8:25-38(2016)
Cited for: VARIANT THR-345; SUBCELLULAR LOCATION; TISSUE SPECIFICITY;
Mutations in plasticity-related-gene-1 (PRG-1) protein contribute to hippocampal seizure susceptibility and modify epileptic phenotype.
Knierim E.; Vogt J.; Kintscher M.; Ponomarenko A.; Baumgart J.; Beed P.; Korotkova T.; Trimbuch T.; Panzer A.; Steinlein O.K.; Stephani U.; Escayg A.; Koko M.; Liu Y.; Lerche H.; Schmitz D.; Nitsch R.; Schuelke M.;
Cereb. Cortex 0:0-0(2023)
Cited for: VARIANTS SER-299 AND THR-345;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.