UniProtKB/Swiss-Prot Q9NPI9 : Variant p.Ile132Arg
Inward rectifier potassium channel 16
Gene: KCNJ16
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Variant information
Variant position:
132
The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:
LP/P [Disclaimer : Variants classification is intended for research purposes only, not for clinical and diagnostic use . The label disease variant is assigned according to literature reports on probable disease-association that can be based on theoretical reasons. This label must not be considered as a definitive proof for the pathogenic role of a variant. ]
The variants are classified into three categories: LP/P, LB/B and US.LP/P: likely pathogenic or pathogenic. LB/B: likely benign or benign. US: uncertain significance
Residue change:
From Isoleucine (I) to Arginine (R) at position 132 (I132R, p.Ile132Arg).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:
Change from medium size and hydrophobic (I) to large size and basic (R)
The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:
-3
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another: Lowest score: -4 (low probability of substitution).Highest score: 11 (high probability of substitution). More information can be found on the following page
Variant description:
In HKTD; when coexpressed with KCNJ10 in Xenopus oocytes, it results in decreased channel expression at the surface and reduced potassium current amplitude compared to the wild-type.
Any additional useful information about the variant.
Sequence information
Variant position:
132
The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:
418
The length of the canonical sequence.
Location on the sequence:
VDNVHSFTGAFLFSLETQTT
I GYGYRCVTEECSVAVLMVIL
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:
The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human VDNVHSFTGAFLFSLETQTTI GYGYRCVTEECSVAVLMVIL
Mouse VDNVHSFTAAFLFSLETQTTI GYGYRCVTEECSVAVLTVIL
Rat VDNVHSFTAAFLFSLETQTTI GYGYRCVTEECSVAVLTVIL
Sequence annotation in neighborhood:
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
Chain
1 – 418
Inward rectifier potassium channel 16
Intramembrane
118 – 134
Helical; Pore-forming; Name=H5
Motif
131 – 136
Selectivity filter
Literature citations
Defects in KCNJ16 cause a novel tubulopathy with hypokalemia, salt wasting, disturbed acid-base homeostasis, and sensorineural deafness.
Schlingmann K.P.; Renigunta A.; Hoorn E.J.; Forst A.L.; Renigunta V.; Atanasov V.; Mahendran S.; Barakat T.S.; Gillion V.; Godefroid N.; Brooks A.S.; Lugtenberg D.; Lake J.; Debaix H.; Rudin C.; Knebelmann B.; Tellier S.; Rousset-Rouviere C.; Viering D.; de Baaij J.H.F.; Weber S.; Palygin O.; Staruschenko A.; Kleta R.; Houillier P.; Bockenhauer D.; Devuyst O.; Vargas-Poussou R.; Warth R.; Zdebik A.A.; Konrad M.;
J. Am. Soc. Nephrol. 32:1498-1512(2021)
Cited for: VARIANTS HKTD ILE-64; ARG-132; ALA-135; CYS-137; 176-ARG--MET-418 DEL AND LEU-250; INVOLVEMENT IN HKTD; CHARACTERIZATION OF VARIANTS HKTD ILE-64; ARG-132; CYS-137; 176-ARG--MET-418 DEL AND LEU-250;
Disclaimer:
Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.