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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9Y697: Variant p.Arg72Gln

Cysteine desulfurase
Gene: NFS1
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Variant information Variant position: help 72 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Arginine (R) to Glutamine (Q) at position 72 (R72Q, p.Arg72Gln). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from large size and basic (R) to medium size and polar (Q) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In COXPD52; decreased protein expression in homozygous patient cells. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 72 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 457 The length of the canonical sequence.
Location on the sequence: help VGPVLRPLYMDVQATTPLDP R VLDAMLPYLINYYGNPHSRT The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         VGPVLRPLYMDVQATTPLDPRVLDAMLPYLINYYGNPHSRT

Mouse                         ---VLRPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRT

Rat                           ---VLRPLYMDVRATTPLDPRVLDAMLPYLVNYYGNPHSRT

Drosophila                    -----RPLYLDAQATTPMDPRVLDAMLPYLTNFYGNPHSRT

Slime mold                    IAGEKQPIYLDMQSTTPIDPRVLDAMLPLYTENYGNPHSKT

Baker's yeast                 TGFGTRPIYLDMQATTPTDPRVLDTMLKFYTGLYGNPHSNT

Fission yeast                 VT-GLHPIYMDFQATSPLDYRVLDSMLPFFTGIYGNPHSRT
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Helix 71 – 82



Literature citations
Exome sequencing identifies NFS1 deficiency in a novel Fe-S cluster disease, infantile mitochondrial complex II/III deficiency.
Farhan S.M.; Wang J.; Robinson J.F.; Lahiry P.; Siu V.M.; Prasad C.; Kronick J.B.; Ramsay D.A.; Rupar C.A.; Hegele R.A.;
Mol. Genet. Genomic Med. 2:73-80(2014)
Cited for: VARIANT COXPD52 GLN-72; INVOLVEMENT IN COXPD52; CHARACTERIZATION OF VARIANT COXPD52 GLN-72; A recurring NFS1 pathogenic variant causes a mitochondrial disorder with variable intra-familial patient outcomes.
Hershkovitz T.; Kurolap A.; Tal G.; Paperna T.; Mory A.; Staples J.; Brigatti K.W.; Gonzaga-Jauregui C.; Dumin E.; Saada A.; Mandel H.; Baris Feldman H.;
Mol. Genet. Metab. Rep. 26:100699-100699(2021)
Cited for: VARIANT COXPD52 GLN-72; INVOLVEMENT IN COXPD52;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.